PopHumanScan
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| Alternative name: | - |
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| Database maintenance site: | Institut de Biotecnologia i de Biomedicina, Universitat Autònoma de Barcelona |
| Country/Region: | Spain |
| Database description: | PopHumanScan is a catalog about thousands of regions of the human genome showing evidences of selection along the human lineage. This database retrieved the population genomic data from PopHuman, which represents the most complete pipeline for population genomics analysis of the 1000 genome project data. To detect local adaptation, many methods and statistics were applied, which were selection tests based on the allele frequency spectrum and the levels of variability (Tajima’s D, Fu and Li’s D and F, Fay and Wu’s H); selection tests based on comparisons of polymorphism and divergence and its derived estimators (MKT, α); selection tests based on the linkage disequilibrium (iHS and XP-EHH) and selection tests based on population differentiation (FST). |
| Organism(s) covered: | |
| Tag - Target: | Genome/Gene, Genetic variation, Organism |
| Tag - Information type: | Sequence, Environment, Geographic Distribution |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | https://pophumanscan.uab.cat/data/files/ |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | https://pophumanscan.uab.cat/about.php |
| Contact information of database: | https://pophumanscan.uab.cat/contact.php |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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Tree Shrew Database iDog GenEpid-J Sequencing Initiative Suomi ALEdb CMarZ-Asia Database VectorBase Coral Trait Database C. elegans Natural Diversity Resource TroCEP |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2020-04-14 |
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Last update date of this record:
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2020-04-14 |
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Record license:
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Creative Commons CC0 license |