pATLAS: Plasmid Atlas
 ID: | |
| Database name: | |
| Alternative name: | |
| URL: | |
| Database maintenance site: | Faculdade de Medicina, Universidade de Lisboa |
| Country/Region: | Portugal |
| Database description: | pATLAS is a database for searching plasmids with tools to visualize relationships between plasmids. Users can search plasmids by the name, taxa, antibiotic resistance and virulence genes, plasmid families, sequence length and sequence similarity. In the plasmid network, it is able to represent plasmids identified by external pipelines using mapping, mash screen or assembly from high-throughput sequencing data. |
| Organism(s) covered: | |
| Tag - Target: | Genome/Gene, cDNA/EST, DNA |
| Tag - Information type: | Sequence, Interaction/Pathway, Bibliography/Documents |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | https://patlas.gitbook.io/docs/usage |
| Contact information of database: | https://gitter.im/plasmidATLAS/Lobby |
| Link(s) to API / SPARQL endpoint | https://patlas.gitbook.io/docs/api |
|
Link to LSDB Archive:
|
- |
|
Link to MEDALS Database list:
|
- |
|
Link to TogoTV:
|
- |
|
Link to FAIRsharing:
|
- |
|
Similar databases:
|
PLSDB addgene DNASU Plasmid Repository NBRP Yeast Transmembrane Helices in Genome Sequences Database of genomes and transcriptional regulations for filamentous fungi Escherichia coli O157:H7 Sakai WebGeSTer DB - A Transcription Terminator Database PlasmID BCCM/GeneCorner Plasmid Collection |
|
Record maintainer
|
Integbio Database Catalog |
|
Record source:
|
|
|
Date of creation of this record:
|
2020-04-14 |
|
Last update date of this record:
|
2020-04-14 |
|
Record license:
|
Creative Commons CC0 license |