Inactive
(Over 14 days)
(Over 14 days)
SCCmec
 ID: | |
| Database name: | |
| Alternative name: | - |
| URL: | |
| Database maintenance site: | Juntendo University (Link to J-Global) |
| Country/Region: | Japan |
| Database description: | SCCmec is a database of staphylococcal cassette chromosome mec (SCCmec) elements that encode methicillin-resistance, which are the most representative staphylococcal cassette chromosome elements (SCCs). This database contains information of stranis and sequences, and it provides three functions to understand SCCmec elements. 1) "Overview" illustrate structures of SCCmec elements. 2) "Search" provides convenient tools to compare new data to extant SCCmec elements by searching SCCmec database, and to ccr genes and Ccr proteins by searching ccr database. The comparison of two SCCmec sequences can be visualized by creating a dot plot. Phylogenetic relations of ccr genes or Ccr proteins can be visualized by creating a phylogenetic tree. 3) "Identification" lists typing schemes and PCR methods to assign SCCmec elements. |
| Organism(s) covered: | |
| Tag - Target: | Genome/Gene |
| Tag - Information type: | Sequence |
| Reference(s) - PubMed ID/DOI: | - |
| Language(s): | Japanese, English |
| Operational status: | Inactive |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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ProPortal Carnation DB FUGU GENOME PROJECT gEVE database KAIKObase Zoysia Genome Database Acytostelium Gene Database |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2015-04-28 |
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Last update date of this record:
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2022-09-21 |
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Record license:
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Creative Commons CC0 license |