ASPicDB: Alternative Splicing Prediction Data Base
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| Database maintenance site: | CASPUR (Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Universita e Ricerca) |
| Country/Region: | Italy |
| Database description: | ASPicDB is a database which provided access to reliable annotations of the alternative splicing pattern of human genes, obtained by ASPic algorithm (Castrignano' et al. 2006), and to the functional annotation of predicted isoforms. It allows users to select and extract specific sets of data related to genes, transcripts and introns fulfilling a combination of user-defined criteria. Several tabular and graphical views of the results are presented, providing a comprehensive assessment of the functional implication of alternative splicing in the gene set under investigation. Furthermore, ASPicDB includes information on tissue-specific splicing patterns of normal and cancer cells, based on available EST data and their library source annotation. |
| Organism(s) covered: | , , , , , |
| Tag - Target: | Genome/Gene, cDNA/EST, Protein, Health/Disease |
| Tag - Information type: | Sequence, Expression |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: PubMed ID: DOI: PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
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| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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TassDB2 Ecgene ASTRA (Archive) ASSETs KOME (Archive) H-InvDB Lotus japonicus (miyakogusa) EST dataset dbCFC UniGene HPRD |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2013-06-17 |
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Last update date of this record:
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2021-08-19 |
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Record license:
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Creative Commons CC0 license |