RAP-DB: Rice Annotation Project DataBase
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| Database maintenance site: | NARO (National Agriculture and Food Research Organization) (Link to J-Global) |
| Country/Region: | Japan |
| Database description: | This database contains highly accurate annotations on the rice genome provided by the rice annotation project (RAP). Literature-based annotation data will be updated a few times a year. Information can be viewed graphically using GBrowse/JBrowse. Additionally, similarity searches (BLAST, BLAT) can be performed with user-provided sequences against the rice genome. Furthermore, Genome-wide variation data among >500 rice accessions are visualized by the multiple genome browser TASUKE+. |
| Organism(s) covered: | |
| Tag - Target: | Genome/Gene, Protein |
| Tag - Information type: | Sequence |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | http://rapdb.dna.affrc.go.jp/download/irgsp1.html |
| Link(s) to Metadata of downloadable data: | http://rapdb.dna.affrc.go.jp/download/irgsp1.html |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | https://rapdb.dna.affrc.go.jp/contact.html |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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Xanthobase TOT-DB Mycoplasma penetrans Genome CCDS Escherichia coli strain K12 genome database DeinoBase KEGG GENES Database SubtiList World-Wide Web Server mycoCLAP Buruli ulcer bacillus Database |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2013-06-17 |
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Last update date of this record:
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2020-11-23 |
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Record license:
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Creative Commons CC0 license |