Database maintenance site: Pasteur Institute of Morocco
Organism(s) covered:Homo sapiens
Description: The Moroccan Genetic Disease Database (MGDD) collect and document mutations and frequencies of polymorphisms reported in the Moroccan population. The information in the MGDD all...Show Details...
Description: KiMoSys is a user-friendly platform that includes a public data repository of relevant published measurements, including metabolite concentrations (time-series and steady-state)...Show Details...
Description: The ESTs and mRNAs from GenBank have been used to identify chimeric RNAs of two or more different genes. By analyzing thousands of chimeric ESTs by RNA sequencing, we found that...Show Details...
Database maintenance site: DataONE, NCEAS (National Center for Ecological Analysis and Synthesis)
Organism(s) covered:All
Description: An international repository intended to facilitate ecological and environmental research.For scientists, the KNB is an efficient way to share, discover, access and interpret com...Show Details...
Database maintenance site: GEUVADIS (Genetic European Variation in Disease), CIPF (Principe Felipe Research Centre Computational Genomics Department), EMBL-EBI (European Bioinformatics Institute), EMBL (European Molecular Biology Laboratory)
Organism(s) covered:All
Description: The European Variation Archive is an open-access archive that accepts submission of, and provides access to, all types of genetic variation data from all species. All users are ...Show Details...
Description: SciCrunch resource registry is the new name of the NIF registry. SciCrunch is a data sharing and display platform. Anyone can create a custom portal where they can select search...Show Details...
Database maintenance site: NIH Blueprint (National Institutes of Health Blueprint for Neuroscience Research), NKI (Nathan S. Kline Institute for Psychiatric Research)
Organism(s) covered:Homo sapiens
Description: Database for open data sharing of resting-state fMRI and DTI images collected from over 50 sites around the world. These data collections now contain comprehensive phentoypic in...Show Details...
Database maintenance site: NERSC (National Energy Research Scientific Computing Center), Uppsala University
Organism(s) covered:All
Description: The Coherent X-ray Imaging Data Bank (CXIDB) offers scientists from all over the world a unique opportunity to access data from Coherent X-ray Imaging (CXI) experiments. It aros...Show Details...
Database maintenance site: INCF (International Neuroinformatics Coordinating Facility ), Max Planck Institute for Human Cognitive and Brain Sciences, Stanford Digital Library, Stanford University
Organism(s) covered:Homo sapiens
Description: The purpose of this database is to collect and distribute statistical maps of the human brain. Such maps are acquired by scientist all around the world using brain imaging techn...Show Details...
Description: iSpyBio is an intelligent and unbiased search engine for Life scientists. It ranks reagents by the number of data such as publications, reviews, characterization images and test...Show Details...
Description: MONOCLdb is an integrative and interactive database designed to retrieve and visualize annotations and expression profiles of long-non coding RNAs (lncRNAs) expressed in Collab...Show Details...
Database maintenance site: Laura and John Arnold Foundation, Stanford University, NIH (National Institutes of Health)
Organism(s) covered:Homo sapiens
Description: The OpenNeuro project (formerly known as the OpenfMRI project) was established in 2010 to provide a resource for researchers interested in making their neuroimaging data openly ...Show Details...
Description: 'Manually Curated Database of Rice Proteins' (MCDRP) is a unique manually curated database based on published experimental data. Currently, the database has data for over 1800 ...Show Details...
Database maintenance site: IBI (Integrative Biomedical Informatics Group, Research Programme on Biomedical Informatics (GRIB) IMIM-UPF)
Organism(s) covered:Homo sapiens
Description: DisGeNET is a discovery platform containing one of the largest collections available of genes and variants involved in human diseases. DisGeNET integrates data from expert curat...Show Details...
Description: CollecTF is a database of transcription factor binding sites (TFBS) in the Bacteria domain. It aims at becoming a reference, highly-accessed database by relying on its ability t...Show Details...
Database maintenance site: Ragon Institute, SBMRI, Sanford-Burnham Prebys Medical Discovery Institute, TSRI
Organism(s) covered:Homo sapiens | Human immunodeficiency virus
Description: The discovery of broadly neutralizing antibodies (bNAbs) has provided an enormous impetus to the HIV vaccine research and to entire immunology. The bNAber database provides open...Show Details...
Database maintenance site: CNB (National Centre for Biotechnolgy)
Organism(s) covered:Drosophila melanogaster | Homo sapiens
Description: CentrosomeDB is a collection of human and drosophila centrosomal genes that were reported in the literature and other sources. The database offers the possibility to study the ...Show Details...
Database maintenance site: UCSF (Laboratory of Andrej Sali, University of California at San Francisco)
Organism(s) covered:All
Description: ModBase (http://salilab.org/modbase) is a database of annotated comparative protein structure models. The models are calculated by ModPipe, an automated modeling pipeline that r...Show Details...
Description: CiteAb is the largest citation-ranked antibody search engine and provides a simple way to find antibodies that work.We use the number of citations as a transparent method to ran...Show Details...
Description: GeneProf Data is an open web resource for analysed functional genomics experiments. We have built up a large collection of completely processed RNA-seq and ChIP-seq studies by c...Show Details...
Database maintenance site: Michael Baudis Group, Institute of Molecular Life Sciences, SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:Homo sapiens
Description: The arrayMap database and bioinformatics resource facilitates the study of the genetics of human cancer. The Progenetix project provides the data customisation and visualization...Show Details...
Database maintenance site: Michael Baudis Group, Institute of Molecular Life Sciences
Organism(s) covered:Homo sapiens
Description: The Progenetix database provides an overview of copy number abnormalities in human cancer from Comparative Genomic Hybridization (CGH) experiments. With 30817 cases from 1016 pu...Show Details...
Description: The JCB DataViewer is an image hosting and visualization platform for original microscopy image datasets associated with articles published in The Journal of Cell Biology, a pee...Show Details...
Description: Soybean Knowledge Base (SoyKB), is a comprehensive all-inclusive web resource developed for soybean translational genomics and molecular breeding. SoyKB stores information about...Show Details...
Description: EBI Metagenomics has changed its name to MGnify to reflect a change in scope. This is a free-to-use resource aiming at supporting all metagenomics researchers. The service is an...Show Details...
Database maintenance site: EMBL-EBI (European Bioinformatics Institute), ISB (Institute for Systems Biology), UCSD (University of California San Diego), National Center for Protein Sciences, University of Washington
Organism(s) covered:All
Description: The ProteomeXchange consortium has been set up to provide a single point of submission of MS proteomics data to the main existing proteomics repositories, and to encourage the d...Show Details...
Description: GigaDB primarily serves as a repository to host data and tools associated with articles in GigaScience; however, it also includes a subset of datasets that are not associated wi...Show Details...
Database maintenance site: Yale University School of Medicine
Organism(s) covered:Homo sapiens | Mus musculus
Description: ORDB began as a database of vertebrate OR genes and proteins and continues to support sequencing and analysis of these receptors by providing a comprehensive archive with search...Show Details...
Database maintenance site: Washington University in St Louis School of Medicine
Organism(s) covered:Saccharomyces cerevisiae
Description: ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo ...Show Details...
Database maintenance site: Department of Molecular Biology, The Scripps Research Institute, Washington State University
Organism(s) covered:Saccharomyces cerevisiae
Description: The National Center for Research Resources' Yeast Resource Center is located at the University of Washington in Seattle, Washington. The mission of the center is to facilitate t...Show Details...
Database maintenance site: Washington State University
Organism(s) covered:Rosaceae
Description: The Genome Database for Rosaceae (GDR) is a curated and integrated web-based relational database providing centralized access to Rosaceae genomics and genetics data and analysis...Show Details...
Description: VectorBase is a web-accessible data repository for information about invertebrate vectors of human pathogens. VectorBase annotates and maintains vector genomes (as well as a num...Show Details...
Database maintenance site: University of Wisconsin-Madison
Organism(s) covered:All
Description: ASAP is a relational database and web interface developed to store, update and distribute genome sequence data and gene expression data. It was designed to facilitate ongoing c...Show Details...
Description: Experimentally-determined interactions and signaling pathways involved in the innate immune response of humans, mice and bovines to microbial infectionShow Details...
Description: Bacteriome.org is a database integrating physical (protein-protein) and functional interactions within the context of an E. coli knowledgebase.Show Details...
Description: UNITE is primarily a fungal rDNA internal transcribed spacer (ITS) sequence database, although they also welcome additional genes and genetic markers. UNITE focuses on high-qual...Show Details...
Database maintenance site: NCS (United Kingdom National Crystallography Service), University of Southampton
Organism(s) covered:
Description: eCrystals is the archive for Crystal Structures generated by the Southampton Chemical Crystallography Group and the EPSRC UK National Crystallography Service.It contains all the...Show Details...
Database maintenance site: University of Nebraska Medical Center
Organism(s) covered:All
Description: The data stored in the APD are gleaned from the Protein Data Bank (PDB), Swiss-Prot Protein Knowledgebase and PubMed National Library of Medicine. The antimicrobial peptides in ...Show Details...
Database maintenance site: The National Autonomous University of Mexico at the Center for Genomic Sciences, University of Mexico
Organism(s) covered:Escherichia coli
Description: RegulonDB is a model of the complex regulation of transcription initiation or regulatory network of the cell. On the other hand, it is also a model of the organization of the ge...Show Details...
Database maintenance site: Manchester Center for Integrative Systems Biology
Organism(s) covered:Saccharomyces cerevisiae
Description: This is a portal to the consensus yeast metabolic network as reconstructed from the genome sequence and literature. It is a highly annotated metabolic map of Saccharomyces cerev...Show Details...
Description: Clinical information about tumor samples and microarray data, with emphasis on array comparative genomic hybridization (aCGH) and data mining of gene copy number changes.Show Details...
Database maintenance site: Georgetown University, Protein Information Resource Consortium, University of Delaware
Organism(s) covered:All
Description: The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and...Show Details...
Description: VBASE2 is an integrative database of germ-line variable genes from the immunoglobulin loci of human and mouse. All variable gene sequences are extracted from the EMBL-Bank.Show Details...
Database maintenance site: University of California Santa Barbara
Organism(s) covered:Metazoa | Viridiplantae
Description: The Paleobiology Database seeks to provide researchers and the public with information about the entire fossil record. It stores global, collection-based occurrence and taxonomi...Show Details...
Database maintenance site: University of California Los Angeles
Organism(s) covered:Mus musculus
Description: Knockout mutant mice strains. The KOMP repository is a resource of mouse embryonic stem (ES) cells containing a null mutation in every gene in the mouse genome. The KOMP collect...Show Details...
Database maintenance site: Institute for Genomics and Bioinformatics, University of California, Irvine, University of California Los Angeles
Organism(s) covered:
Description: ChemDB is a chemical database containing nearly 5M commercially available small molecules, important for use as synthetic building blocks, probes in systems biology and as leads...Show Details...
Description: Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis. It contains genomic, development data and community information for Xenopus research. It ...Show Details...
