Description: Colorectral Cancer Atlas is an web-based resource which integrates genomic and proteomic pertaining to colorectal cancer cell lines and tissues.Data catalogued includes, quantit...Show Details...
Description: SIGNOR, the SIGnaling Network Open Resource, organizes and stores in a structured format signaling information published in the scientific literature. The captured information i...Show Details...
Database maintenance site: University of Rome Tor Vergata
Organism(s) covered:Viruses
Description: VirusMentha is a collection of viral interactions manually curated from protein-protein databases that adhere to the IMEx consortium. This resource offers a series of tools to a...Show Details...
Description: iDigBio is the US national resource for digitized information about vouchered natural history collections within the context established by the NIBA community strategic plan and...Show Details...
Description: ReMap is an integrative analysis of transcription factor ChIP-seq experiments publicly available, merged with the Encode dataset. The resource is an extensive regulatory catalog...Show Details...
Description: Carlos III Networked Proteomics Platform, ProteoRed-ISCIII is a National Network for the coordination, integration and development of the Spanish Proteomics Facilities providing...Show Details...
Description: A crowdsourced collection of personal genomics data. Includes SNP genotyping, exome sequencing data, phenotypic annotation and quantified self tracking data.Show Details...
Database maintenance site: Beth Israel Deaconess Medical Center, Boston Children's Hospital, Division of Sleep & Circadian Disorders, Brigham and Women's Hospital/Harvard Medical School, Dana-Farber Cancer Institute, Harvard Medical School, Massachusetts General Hospital, NCI (National Cancer Institute, National Institutes of Health)
Organism(s) covered:Homo sapiens | Mus musculus
Description: The PlasmID Repository provides researchers with inexpensive sequencing and plasmid services, holding ~350,000 plasmids, including most human cDNAs as well as shRNA libraries. P...Show Details...
Database maintenance site: NIMH (National Institute of Mental Health)
Organism(s) covered:Homo sapiens
Description: NDCT is an informatics platform for the sharing of clinical trial data funded by the National Institute of Mental Health. NDCT is a part of the NIMH Data Archive (NDA), powered ...Show Details...
Database maintenance site: NIMH (National Institute of Mental Health)
Organism(s) covered:Homo sapiens
Description: RDoCdb is an informatics platform for the sharing of human subjects data related to Mental Health research. This database may be used to plan for data submission, share your dat...Show Details...
Database maintenance site: NCBI (National Center for Biotechnology Information)
Organism(s) covered:All
Description: The BioSample database stores submitter-supplied descriptive information, or metadata, about the biological materials used in experimental assays, from which data stored in NCBI...Show Details...
Database maintenance site: The Institute for Quantitative Social Service, Harvard University, Harvard Medical School, SBGrid Consortium
Organism(s) covered:All
Description: This resource provides open access to the host laboratory as well as the inhouse collections of X-ray diffraction, MicroED, and LLSM datasets.Show Details...
Description: Experimental data generated by NIH Metabolomics Regional Comprehensive Metabolomics Resource Cores (RCMRC)s * and other NIH-sponsored projects is available for searching and ana...Show Details...
Database maintenance site: University of Illinois at Chicago
Organism(s) covered:All
Description: MoonProt Database is a manually curated, searchable, internet-based resource with information about the over 200 proteins that have been experimentally verified to be moonlighti...Show Details...
Database maintenance site: LONI (Laboratory of Neuro Imaging, University of Southern California)
Organism(s) covered:Homo sapiens
Description: PPMI is an observational clinical study to verify progression markers in Parkinson's disease. The study is designed to establish a comprehensive set of clinical, imaging and bio...Show Details...
Database maintenance site: University of Oxford, University of Minnesota, Washington University in St Louis, Radboud University
Organism(s) covered:Homo sapiens
Description: The HCP is mapping the human connectome as accurately as possible in a large number of normal adults and is making this data freely available to the scientific community using a...Show Details...
Description: The NIDDK Information Network provides access to large pools of data relevant to the mission of NIDDK. The dkNET portal contains information about research resources such as ant...Show Details...
Description: The NIDDK Central Repository stores biosamples, genetic and other data collected in designated NIDDK-funded clinical studies. The purpose of the NIDDK Central Repository is to e...Show Details...
Database maintenance site: Beth Israel Deaconess Medical Center, LCP (Laboratory for Computational Physiology, Massachusetts Institute of Technology), Philips Healthcare
Organism(s) covered:Homo sapiens
Description: MIMIC-III (Medical Information Mart for Intensive Care III) is a large, freely-available database comprising deidentified health-related data associated with over forty thousand...Show Details...
Description: The Stem Cell Commons were initiated by the Harvard Stem Cell Institute to develop a community for stem cell bioinformatics. This open source environment for sharing, processing...Show Details...
Database maintenance site: transPLANT (trans-national infrastructure for plant genomic science), IPK (Leibniz Institute of Plant Genetics and Crop Plant Research)
Organism(s) covered:Viridiplantae
Description: This repository provides several plant genomic and phenotypic datasets resulting from IPK and German Plant Phenotyping Network (DPPN) research activities. It was established in ...Show Details...
Database maintenance site: Centre sur la Biodiversite de l'Universite de Montreal
Organism(s) covered:All
Description: Biological collections are replete with taxonomic, geographic, temporal, numerical, and historical information. This information is crucial for understanding and properly managi...Show Details...
Database maintenance site: CRIA (The Reference Center on Environmental Information)
Organism(s) covered:All
Description: speciesLink (also known as the Distributed Information System for Biological Collections: Integrating Species Analyst and SinBiota (FAPESP)) implements a distributed information...Show Details...
Database maintenance site: SMHI (Swedish Meterological and Hydrological Institute)
Organism(s) covered:All
Description: SHARK ("Svenskt HavsARKiv" / "Swedish Ocean Archive") contains marine environmental monitoring data from the seas surrounding Sweden. SHARK is accessed via SHARKweb (for human-r...Show Details...
Description: Fulgoromorpha Lists On the Web (FLOW) is an online database that aims to provide an easy-access summary of available biological published primary data on planthoppers (Hemiptera...Show Details...
Database maintenance site: MVZ (Museum of Vertebrate Zoology at Berkeley), University of Colorado Boulder
Organism(s) covered:All
Description: VertNet is a collaborative project funded by the National Science Foundation that aims to make biodiversity data free and openly accessible on the web from publishers worldwide....Show Details...
Database maintenance site: INI (The USC Mark and Mary Stevens Neuroimaging and Informatics Institute, University of Southern California)
Organism(s) covered:Homo sapiens
Description: The LONI Image Data Archive (IDA) is a user-friendly environment for archiving, searching, sharing, tracking and disseminating neuroimaging and related clinical data. The IDA is...Show Details...
Description: The immune tolerance data management and visualization portal for studies sponsored by the Immune Tolerance Network (ITN) and collaborating investigators. Data from published st...Show Details...
Database maintenance site: CEDAR (Center for Expanded Data Annotation and Retrieval), Human Immunology Project Consortium, ISA-Tools, University of Oxford, Northrop Grumman Health IT, Stanford University, Technion - Israel Institute of Technology, University at Buffalo, University of California San Francisco, AMP (Accelerating Medicines Partnership)
Organism(s) covered:Homo sapiens | Mus musculus
Description: The ImmPort system serves as a long-term, sustainable archive of immunology research data generated by investigators mainly funded through the NIAID/DAIT. The core component of ...Show Details...
Description: The Gene Expression Database (GXD) is a community resource for gene expression information from the laboratory mouse. GXD stores and integrates different types of expression dat...Show Details...
Database maintenance site: Swiss Institute for Computer Assisted Surgery
Organism(s) covered:Homo sapiens
Description: The Sicas Medical Image Repository is a centralized storage system where the data such as Images, Segmentations, SSM can be used to build and shared statistical shape models. Di...Show Details...
Description: The ribosomal RNA operon copy number database is a publicly available, curated resource for ribosomal operon (rrn) copy number information for Bacteria and Archaea.Show Details...
Database maintenance site: COS (Center for Open Science)
Organism(s) covered:All
Description: The OSF supports the entire research lifecycle: planning, execution, reporting, archiving, and discovery. Features include: automated versioning, logging of all actions, colla...Show Details...
Description: DEPOD - the human DEPhOsphorylation Database is a manually curated database collecting human active and inactive phosphatases, their experimentally verified protein and non-prot...Show Details...
Database maintenance site: BioComputing laboratory, University of Padua, Institue of Molecular Biology, gGmbH, Structural Bioinformatics and Molecular Modelling Group, CRBM
Organism(s) covered:All
Description: RepeatsDB (http://repeatsdb.bio.unipd.it/) is a database of annotated tandem repeat protein structures. Tandem repeats pose a difficult problem for the analysis of protein struc...Show Details...
Description: A database of protein disorder and mobility annotations. MobiDB was designed to offer a centralized resource for annotations of intrinsic protein disorder. The database feature...Show Details...
Description: The compartmentalized protein-protein interaction database (ComPPI), provides qualitative information on the interactions, proteins and their localizations integrated from multi...Show Details...
Database maintenance site: CPqRR (Fiocruz Minas Centro de Pesquisas Rene Rachou), St Vincent's Institute, Department of Biochemistry, University of Cambridge
Organism(s) covered:All
Description: Platinum is a manually curated, literature-derived database comprising over 1,000 mutations which for the first time associates experimental information on changes in protein-li...Show Details...
Description: KnotProt collects information about proteins with knots or slipknots. The knotting complexity of proteins is presented in the form of a matrix diagram that shows users the knot ...Show Details...
Description: Retrotransposons, which comprises LINE, SINE and LTR-containing elements, accounts for almost half of our genome (Fig. 1). They are mobile genetics elements - also known as jump...Show Details...
Description: Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of sim...Show Details...
Closed
Nuclear Receptor Signaling Atlas: NURSA
Database maintenance site: Baylor College of Medicine
Description: The mission of NURSA is to accrue, develop, and communicate information that advances our understanding of the roles of nuclear receptors (NRs) and coregulators in human physiol...Show Details...
Database maintenance site: Cambridge Systems Biology Centre, University of Cambridge, MGI (Mouse Genome Informatics)
Organism(s) covered:Mus musculus
Description: A database of integrated mouse data from MGI, powered by InterMine. MouseMine is member of InterMOD, a consortium of model organism databases dedicated to making cross-species d...Show Details...
Description: FlyMine is an integrated database of genomic, expression and protein data for Drosophila, Anopheles and C. elegans. Integrating data makes it possible to run sophisticated data ...Show Details...
Database maintenance site: NIH (National Institutes of Health)
Organism(s) covered:Mus musculus
Description: The Candidate Cancer Gene Database (CCGD) was developed to disseminate the results of transposon-based forward genetic screens in mice that identify candidate cancer genes. The ...Show Details...
Database maintenance site: NCBI (National Center for Biotechnology Information)
Organism(s) covered:All
Description: The Trace Archives includes the following archives:The Sequence Read Archive (SRA) stores raw sequence data from "next-generation" sequencing technologies including 454, IonTorr...Show Details...
Description: The Environmental Data Initiative is an NSF-funded project meant to accelerate curation and archive of environmental data, emphasizing data from projects funded by the NSF DEB. ...Show Details...
