Database maintenance site: JIRCAS (Japan International Research Center for Agricultural Sciences)
Organism(s) covered:Embryophyta
Description: Information on local vegetables of Thailand is collected, managed, and recorded in this database. It was discovered that these vegetables have useful physiological functions.Show Details...
Database maintenance site: Wikimedia Foundation Inc.
Organism(s) covered:
Description: WikiProject Molecular and Cellular Biology is a resource for molecular biology information. The site contains summary pages and links to primary research on a variety of molecul...Show Details...
Description: Gray's Anatomy of the Human Body is an online resource for human anatomy. This page contains reproductions of the original plates from the landmark Gray's Anatomy atlas. Users c...Show Details...
Database maintenance site: National Institutes of Biomedical Innovation, Health and Nutrition
Organism(s) covered:
Description: Sagace is a web-based search engine to retrieve information from biomedical databases in Japan. It aims primarily to assist biomedical research and drug development, and offers ...Show Details...
Database maintenance site: National Institute of Radiological Sciences
Organism(s) covered:
Description: RaDaP is an online database for radiosynthesis of PET probes (total about 3,000 compounds). Detailed data can be obtained by simply clicking the link.Show Details...
Database maintenance site: National Institute of Radiological Sciences
Organism(s) covered:
Description: MOLECULAR PROBE LIBRARY is a database of PET probes which are manufactured with NIRS technology. It is one of the world's largest molecular probe library.Show Details...
Database maintenance site: JST (Japan Science and Technology Agency)
Organism(s) covered:
Description: This is a collection of data from primary academic societies focusing on the Associate Societies of the Science Council of Japan. It is based on GAKKAI MEIKAN 2007-09, which was...Show Details...
Database maintenance site: JST (Japan Science and Technology Agency)
Organism(s) covered:
Description: researchmap is a platform for managing, publishing, and sharing information on researchers in Japan. Over 300,000 researchers have registered their profiles and research outputs...Show Details...
Database maintenance site: NARO (National Agriculture and Food Research Organization)
Organism(s) covered:Bacteria | Fungi
Description: This is a database of bacteria and filamentous fungi living in agricultural environment. Databases such as the Index of Parasitic and Symbiotic Microbes on Wild Plants in Japan...Show Details...
Description: This database provides access to data on oceanic islands plant specimens of the herbarium of the University Tokyo. The records include data and images of specimens in the Angios...Show Details...
Description: KU-MACC accepts for deposit strains and distributes Algal culture strains. It provides inrformation about stock strain lists, culturing and submission methods, ways to purchase,...Show Details...
Description: The Microbial Culture Collection at the National Institute for Environmental Studies collects and distributes culture strains of cyanobacteria, eukaryotic microalgae, protozoa, ...Show Details...
Database maintenance site: Kazusa DNA Research Institute
Organism(s) covered:Arabidopsis thaliana
Description: This database provides the sequencing data for Arabidopsis determined by the Kazusa DNA Laboratory, as a part of the international collaborative project for the Arabidopsis geno...Show Details...
Database maintenance site: Tohoku University Graduate School of Agricultural Science
Organism(s) covered:Brassica
Description: Tohoku Univ. Brassica Seed Bank includes germplasm of genus Brassica and its allies collected from Mediterranean area and obtained by seed exchange with universities and institu...Show Details...
Description: This database was constructed with the objective of promoting research on intracellular structures in the guard cells of plants. The database contains 11,160 optically sliced im...Show Details...
Database maintenance site: RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered:Arabidopsis thaliana
Description: RIKEN Plant Hormone Research Network consists of six research groups related to plant hormone study. This site provides data and information on hormone metabolic pathways and ge...Show Details...
Database maintenance site: National Genomics Data Center, China National Center for Bioinformation/Beijing Institute of Genomics, Chinese Academy of Sciences
Organism(s) covered:Magnoliophyta
Description: LSD is a database of published senescence-associated genes (SAGs) and mutants. Each entry in the LSD represents a gene or mutant obtained from the research paper, with informati...Show Details...
Description: The gene Research Center at the University of Tsukuba, as a core research institute for NBRP (the National BioResource Project) tomato, possesses many varieties of tomato cultiv...Show Details...
Database maintenance site: Kazusa DNA Research Institute
Organism(s) covered:Solanum lycopersicum
Description: This is the genome database for tomato, a model organism for the Solanum family. Information such as DNA markers in tomatoes, SNP annotations (functional markers), and contigs, ...Show Details...
Database maintenance site: Kazusa DNA Research Institute
Organism(s) covered:Glycine max
Description: This database provides marker information for soybean. Each marker has information on EST-SSR, including primer sequences and links to corresponding EST sequences. Marker inform...Show Details...
Description: PepBase is a peptide database which consists of experimental data of Arabidopsis phosphopeptide measured by a single analytical platform at the proteomics laboratory of IAB, Kei...Show Details...
Database maintenance site: RIKEN Yokohama Institute
Organism(s) covered:Glycine max
Description: This database contains information of genes predicted to be transcription factors from the complete soybean genome sequences (Glyma1.0 model) and the comprehensive annotation. C...Show Details...
Database maintenance site: RIKEN Yokohama Institute
Organism(s) covered:Glycine max | Lotus japonicus | Medicago truncatula
Description: This database provides comprehensive annotation and genes predicted to be transcription factors from genome sequences of primary legume model plants: soybean (Glycine max), Lotu...Show Details...
Database maintenance site: Kazusa DNA Research Institute
Organism(s) covered:Jatropha curcas
Description: This is a database for the Jatropha genome. It contains the complete genome sequence, amino acid sequences, and motif predictions via InterPro. BLAST homology searches, keywords...Show Details...
Description: Clover Garden is a database that provides easy access to clover (Trifolium species) genome information. The database contains marker information including gel image, linkage map...Show Details...
Description: ChemProt is a disease chemical biology database, which is based on a compilation of multiple chemical-protein-disease annotation resources. The database includes over 1,700,000 ...Show Details...
Inactive (Over 14 days)
CADgene: Coronary Artery Disease Gene Database
Database maintenance site: Huazhong University of Science and Technology
Organism(s) covered:Homo sapiens
Description: CADgene is a comprehensive database for Coronary Artery Disease (CAD) genes. It consists of manually extracted information of the CAD related genes from literature. Currently, t...Show Details...
Database maintenance site: Department of Fisheries and Allied Aquacultures, Auburn University
Organism(s) covered:Ictalurus
Description: cBARBEL (abbreviated from catfish Breeder And Researcher Bioinformatics Entry Location) is an online open-access database for genome biology of ictalurid catfish (Ictalurus spp....Show Details...
Database maintenance site: University of California at Santa Cruz
Organism(s) covered:
Description: BISC is a protein-protein interaction (PPI) database intending to bridge between the two communities most active in their characterisation: structural biology and functional gen...Show Details...
Database maintenance site: National Institute of Genetics
Organism(s) covered:Trypanosoma | Homo sapiens
Description: This is a comprehensive database for enzymes, which catalyze pyrimidine biosynthesis or oxidation-reduction reactions, and are candidates of the effective target in regard to dr...Show Details...
Database maintenance site: National Institute of Genetics
Organism(s) covered:
Description: This is a database of collected and merged information on protein-compound interactions throughout the world. The data are obtained from ChEMBL, DrugBank, CTD, and PubChem BioAs...Show Details...
Database maintenance site: National Institute of Genetics
Organism(s) covered:
Description: This is an on-demand analysis database performing functional predictions for amino acid sequences designated within a protein. The functional predictions are made by analysis us...Show Details...
Database maintenance site: National Institute of Genetics
Organism(s) covered:
Description: This is a database of amino acid sequences, which integrates various protein related informations. It includes sequences of amino acids come from many species and cross-referenc...Show Details...
Database maintenance site: University California Santa Cruz
Organism(s) covered:Homo sapiens
Description: UCSC Xena is a suite of web-based tools to visualize, integrate and analyze cancer genomics and its associated clinical data. The database provides whole-genome to base-pair lev...Show Details...
Description: SPIKE is a knowledge-base of highly curated human signaling pathways. SPIKE contains three main software parts:1) A database of biological signaling pathways. It's constructed o...Show Details...
Description: ASPicDB is a database which provided access to reliable annotations of the alternative splicing pattern of human genes, obtained by ASPic algorithm (Castrignano' et al. 2006), a...Show Details...
Database maintenance site: NARO (National Agriculture and Food Research Organization)
Organism(s) covered:Oryza sativa
Description: This database is comprised of gene loci whose function has been linked to a phenotype in published papers in the Web of Science. The information, such as phenotype, method of fu...Show Details...
Database maintenance site: NARO (National Agriculture and Food Research Organization)
Organism(s) covered:Oryza sativa
Description: Q-TARO is a database of Rice QTLs from published research papers. By screening for redundancy of traits at the same physical positions, as of March 31 of 2008, 1051 QTLs extract...Show Details...
Closed
Species Dictionary
Database maintenance site: National Institute of Genetics
Database maintenance site: Charite - University Medicine Berlin, Institute for Physiology, Structural Bioinformatics Group
Organism(s) covered:
Description: Fragment Store is a database, that provides access to information about fragments of compounds with their properties (e.g. charge, hydrophobicity, binding site preferences). It ...Show Details...
Description: This is a page of informational network related to superfamily hominoidea in Japan (chimpanzee, bonobo, gorilla, orangutan, gibbon). Information such as distribution charts, mat...Show Details...
Description: This is a project for users to submit structural annotations for proteins using PDB data and to build a community of information exchange. As of 2011, approximately 75,000 PDB e...Show Details...
Description: The Hymenoptera Genome Database (HGD) is a comprehensive database providing access to curated data contributed by an extensive, active research community working on insect speci...Show Details...
Database maintenance site: Charite - University Medicine Berlin, Institute for Physiology, Structural Bioinformatics Group
Organism(s) covered:Homo sapiens
Description: CancerResource is a database for drug-target relationships related to cancer as well as for supporting information or experimental data. Drug-target relationships are determined...Show Details...
Database maintenance site: ICBMS (Institute for Molecular and Supramolecular Chemistry and Biochemistry, University of Lyon 1)
Organism(s) covered:
Description: MatrixDB is a database focused on interactions established by extracellular proteins and polysaccharides. This database takes into account the multimeric nature of the extracell...Show Details...
Database maintenance site: QFAB (Queensland Facility for Advanced Bioinformatics)
Organism(s) covered:Araneae
Description: ArachnoServer is a manually curated database which contains information on the sequence, three-dimensional structure, and biological activity of protein toxins derived from spid...Show Details...
Database maintenance site: Centre for DNA Fingerprinting and Diagnostics
Organism(s) covered:Bacteria | Archaea
Description: PSSRdb is a relational database of polymorphic simple sequence repeats (PSSRs) extracted from 85 different species of prokaryotes. It contains the data of perfect SSRs which are...Show Details...
Database maintenance site: Bioinformatics Lab., Institute of Information Science, Academia Sinica
Organism(s) covered:
Description: The TMPad database contains information on the structural folds in alpha-helical membrane proteins obtained from observing helix-helix interactions experimentally. Additionally,...Show Details...
