Database maintenance site: RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:Brachypodium distachyon
Description: BRACHYPEDIA is a photo library about growth stages of Brachypodium distachyon. Each entry contains photographs and information such as Zadoks Decimal Code, numbers of leaves, ti...Show Details...
Description: UniCarbKB is a knowledge database of glycan structures of glycoproteins. It provides comprehensive information concerning glycan structures and published glycoprotein informatio...Show Details...
Database maintenance site: Keio University School of Medicine
Organism(s) covered:Homo sapiens | Mus musculus
Description: SKIP is operated by Keio University of School of Medicine as an embodiment of the Human Stem Cells Informatization Project of the Ministry of Health, Labour and Welfare, Japan.S...Show Details...
Database maintenance site: RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:Brachypodium distachyon
Description: RBFL BD is a comprehensive collection of full-length cDNAs from Brachypodium distachyon. It provides gene structural annotations of Brachypodium genes based on full-length cDNA ...Show Details...
Database maintenance site: Society for Actinomycetes Japan
Organism(s) covered:Actinobacteria
Description: Digital Atlas of Actinomycetes 2 is a collection of micrographs and annotations about Actinomycetes. Data are collected from the 'Atlas of Actinomycetes' (Asakura Publishing Co....Show Details...
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:Homo sapiens
Description: This is a database collecting sensory characteristics of vision, hearing, and touch measured by National Institute of Advanced Industrial Science and Technology. To allow search...Show Details...
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description: The SDBS database consists of of sensory characteristics of vision, hearing, and touch measured by National Institute of Advanced Industrial Science and Technology. To allow sea...Show Details...
Database maintenance site: RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:Arabidopsis thaliana
Description: ARTADE2DB is a database that integrates not only the information predicted by Dynamic-Structure-based Dynamic Expression (DSDE) analysis, but also annotations and other function...Show Details...
Database maintenance site: Tohoku Medical Megabank Organization,Tohoku University
Organism(s) covered:Homo sapiens
Description: jMorp is a database of metabolome and proteome data in plasma obtained from about 500 healthy volunteers in Tohoku University Tohoku Medical Megabank Organization (ToMMo). It co...Show Details...
Database maintenance site: Tokai University School of Medicine
Organism(s) covered:Mammaliia
Description: gEVE database provides comprehensive datasets of sequences, genomic loci and functional annotations of endogenous viral elements (EVE), including endogenous retroviruses (ERV) a...Show Details...
Description: The RCSB PDB Molecule of the Month is a database of short accounts on selected molecules from the Protein Data Bank by David S. Goodsell (The Scripps Research Institute and the ...Show Details...
Database maintenance site: NCBI (National Center for Biotechnology Information)
Organism(s) covered:Homo sapiens
Description: ClinVar is a freely available archive describing relationships between medically important variants and phenotypes. Submissions report human variation, interpretations of the re...Show Details...
Database maintenance site: RIKEN (The Institute of Physical and Chemical Research) Harima Institute
Organism(s) covered:Thermus thermopiles HB8
Description: WCPDB is a database of functional proteins from an extremely thermophilic bacterium, Thermus thermophilus HB8. The database contains information derived from structural, functio...Show Details...
Database maintenance site: Center for Computational Regulatory Genomics, Beckman Institute
Organism(s) covered:Echinodermata
Description: Echinobase is a comparative genomics platform for the echinoderm clade. It contains information on genomes of Strongylocentrotus purpuratus, Lytechinus variegatus, Patiria minia...Show Details...
Description: J-phenome is a portal for phenotype databases of model organisms, in cooperation with various Japanese projects to reveal the relation between phenotypes and gene functions. It ...Show Details...
Description: The Integrative Disease Omics Database has been constructed through a project named "Comprehensive exploration of drug targets based on integrative disease multi-omics analyses"...Show Details...
Description: S. pombe OriDB is a database providing a catalogue of confirmed and predicted DNA replication origin sites in budding yeast (S. pombe). Each record contains the following inform...Show Details...
Description: S. cerevisiae OriDB is a database providing a catalogue of confirmed and predicted DNA replication origin sites in fission yeast (Saccharomyces cerevisiae). Each record contains...Show Details...
Inactive (Over 14 days)
Transcriptional Regulation Portal
Database maintenance site: Kyushu Institute of Technology
Description: TRP is a portal collecting databases and analysis tools related to transcriptional regulation research and includes brief descriptions about the databases or tools. This databas...Show Details...
Description: Zoological Collection @ Stazione Zoologica 'Anton Dohrn' di Napoli (SZN) is a database about zoological collections owned by the Stazione Zoologica Anton Dohrn in Naples since ...Show Details...
Description: Galapagos Islands Image Database is a collection of photographic images about Galapagos Islands. It contains about 1,300 photographic images that Shuzo Ito (also spelt as Syuzo ...Show Details...
Description: This site is a portal site about databases of sensory systems, brains, and behaviour of invertebrates, especially insects. The databases in this site contain photographs and mov...Show Details...
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:Homo sapiens
Description: Epigenome project portal site is a portal database for epigenome project about human genome. This database is constructed with databases about epigenome project-specific data, C...Show Details...
Inactive (Over 14 days)
PHDB: PH Database
Database maintenance site: physiome.jp
Organism(s) covered:Homo sapiens
Description: PHDB is an integrated database for human physiome and systems biology researches. It contains three databases:1) PHML Model Database, which stores a number of modules representi...Show Details...
Description: OryzaPG-DB is a database for rice proteogenomics. It contains proteomic data such as the proteome of the rice undifferentiated cultured cells, and information on the correspondi...Show Details...
Database maintenance site: National Institute of Technology, Ibaraki College
Organism(s) covered:Foraminifera
Description: This database is a collection of the literature on Foraminifera from Japan published during the years 1890 to 1989 including Japanese workers' contributions on materials collect...Show Details...
Database maintenance site: NICT (National Institute of Information and Communications Technology)
Organism(s) covered:Schizosaccharomyces pombe
Description: GFP-fusion library of Schizosaccharomyces pombe' is a database about intracellular localization of GFP-fusion proteins using genomic DNA library of Schizosaccharomyces pombe. It...Show Details...
Database maintenance site: Tokyo Metropolitan Institute of Medical Science
Organism(s) covered:Homo sapiens
Description: Neuropathology database is a database about fundamental knowledge on anatomy and pathology of the central nervous system. It provides images and information about normal anatomy...Show Details...
Description: This database is a database of macroarray analysis data of Mesorhizobium loti MAFF303099. It contains average data about genome-wide expression difference between two conditions...Show Details...
Database maintenance site: The Japanese Society of Nuclear Medicine
Organism(s) covered:Homo sapiens
Description: Annals of Nuclear Medicine is a portal site for two journals published by the Japanese Society of Nuclear Medicine. It includes archives of the 'Japanese journal of Nuclear Medi...Show Details...
Database maintenance site: National Institute for Physiological Sciences
Organism(s) covered:
Description: Experimental Techniques for Physiological Sciences is a database about summary of experimental protocols and techniques through a variety of physiological research activities. I...Show Details...
Description: Database of Parasites in Fish and Shellfish (D-PAF) is a database of parasitic organisms in fishes, shellfishes and others which are usually made into seafood. Each entry contai...Show Details...
Database maintenance site: NIMG-PF committee, RIKEN CBS (RIKEN Center for Brain Science)
Organism(s) covered:Homo sapiens | Macaca fuscata
Description: NIMG-PF is a database about brain imaging. This database provides useful experimental data, analytical methods of brain imaging, and/or mathematical modeling as well as tutorial...Show Details...
Description: Visual Archive of Natural History Bibliotheca is a database of drawings and writings on natural history in Japan which has been retained at Tokyo National Museum. The drawings a...Show Details...
Description: RAISE Database is a database about the natural environments in northeastern Asia, with particular focus on Mongolia. It contains various data sets related to Hydrometeorology, a...Show Details...
Description: SHELLS DATABASE is a database of shellfish. Each entry contains photographs of shellfish (mainly shells), Japanese name, species name, locality, distribution, references, etc.. ...Show Details...
Database maintenance site: UMIN (University Hospital Medical Information Network Center)
Organism(s) covered:Homo sapiens
Description: UMIN-CTR is a registration database for clinical trials. Each entry contains title of the study, condition, objectives, assessment, study design, intervention, public contact, e...Show Details...
Database maintenance site: Tottori University Faculty of Agriculture Fungus/Mushroom Resource and Research Center
Organism(s) covered:Fungi
Description: This database is an on-line catalog of fungi cultures (TUFC strains) stored by Fungus/Mushroom Resource and Research Center (FMRC) in Tottori University. Each record contains ta...Show Details...
Database maintenance site: RIKEN (The Institute of Physical and Chemical Research), NICT (National Institute of Information and Communications Technology)
Organism(s) covered:
Description: This is a database of THz spectroscopic measurements of several organic or inorganic materials. The database contains spectra and information of conditions for dozens of compoun...Show Details...
Description: This database is a portal site for seven life science journals published from Japan. It includes descriptions and site links for "Current Herpetology", "Journal of Mammalian Ova...Show Details...
Database maintenance site: The Ohio State University
Organism(s) covered:Mus musculus
Description: RTCGD is a database of retrovirus and transposon tagged cancer gene in mouse. It contains information about clones, such as ID, tumor ID, strain, publication, etc.It allows user...Show Details...
Description: VSPECIMENS is a database about specimens referred in various researches (voucher specimens) . It provides digitized specimen information, such as label texts, images and bibliog...Show Details...
Database maintenance site: Tohoku University School of Medicine
Organism(s) covered:Homo sapiens
Description: The RAS/MAPK Syndromes Homepage includes a database about RAS/MAPK pathways implicated in growth-factor mediated cell proliferation, differentiation and cell death. It contains ...Show Details...
Database maintenance site: Hamamatsu University School of Medicine
Organism(s) covered:Homo sapiens
Description: SYMPHONIE is a database for disease caused by a genetic factor. It contains patient condition, diagnosis, and inspection data with the disease name, the causative gene, and the ...Show Details...
Inactive (Over 14 days)
SCCmec
Database maintenance site: Juntendo University
Organism(s) covered:Staphylococcus aureus
Description: SCCmec is a database of staphylococcal cassette chromosome mec (SCCmec) elements that encode methicillin-resistance, which are the most representative staphylococcal cassette ch...Show Details...
Database maintenance site: RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:Striga hermonthica
Description: This database is a catalog of Striga hermonthica ESTs. It contains EST information which annotated using a free EST analysis tool, EST2uni. This database provides the following ...Show Details...
Database maintenance site: The University of Tokyo The Institute of Medical Science
Organism(s) covered:Homo sapiens | Mus musculus
Description: IRView is a database and viewer of interacting regions (IRs) in protein sequences. It contains 3,417 IRs of human and mouse proteins obtained from several sources, together with...Show Details...
Description: Ig-Base is a collection of antibody data compiled from Protein Data Bank with associated annotations by manual inspection. Each entry contains PBD ID, antibody name, length and ...Show Details...
Description: This is a collection of knowledge on experimentally verified intrinsically disordered proteins. It contains manual annotations by curators on intrinsically disordered regions, i...Show Details...
Description: This database is a portal site about an international project, Human Kidney and Urine Proteome Project. It contains databases for kidney and urine which were obtained by proteom...Show Details...
