Description: It is a database for non-B DNAs which do not fall into a right-handed Watson-Crick double-helix. This database provides information of genomic regions predicted to form non-B DN...Show Details...
Database maintenance site: NIHS (National Institute of Health Sciences)
Organism(s) covered:
Description: It provides information of allergenic proteins and low-molecular weight allergenic compounds. The allergenic proteins have been collected from literature sources and AllergenOnl...Show Details...
Description: PhaSePro is a database of proteins driving LLPS (liquid-liquid phase separation) in cells. For each of them, this database mainly provides the protein information, the coding ge...Show Details...
Description: PhaSepDB is a database of proteins related to phase separation (PS) and Membraneless organelles (MLOs) . This database mainly contains the protein names, links to Uniprot, codin...Show Details...
Database maintenance site: University of Toyama Institute of Natural Medicine
Organism(s) covered:Viridiplantae
Description: KampoDB is an integrated database for natural medicines such as herbal medicines. It provides information of kampo formulas, including crude drugs, constituent natural compounds...Show Details...
Description: AlphaFold DB is a database for protein structure predictions for human and 20 other key organisms. Each entry contains basic information about the protein and three separate out...Show Details...
Database maintenance site: Graduate School of Integrated Sciences for Life, Hiroshima University
Organism(s) covered:Bacteria
Description: It is a set of 16S RNA sequences for metagenomic analysis using kraken2. Sequences with taxonomy ID, accession No. and definition are provided in fasta format.Show Details...
Database maintenance site: China National Center for Bioinformation / Beijing Institute of Genomics, Chinese
Organism(s) covered:Bacteria | Archaea
Description: PADS Arsenal is a database of genes associated with 18 categories of prokaryotic antiviral defense systems. This database mainly contains Assembly accessions, the number of gene...Show Details...
Description: oRNAment is a database of putative RBP (RNA-binding-protein) binding site instances in coding and non-coding RNA in five species. For each RBP, this database mainly provides an ...Show Details...
Database maintenance site: Institute of Structural and Molecular Biology, Birkbeck College
Organism(s) covered:Homo sapiens
Description: OGRDB is a database of the repertoires of human germline receptor alleles. Each data is submitted by researchers and reviewed and accepted by IARC (International Agency for Rese...Show Details...
Database maintenance site: Huazhong Agricultural University, College of Informatics
Organism(s) covered:Homo sapiens
Description: ncRNA-eQTL is a database of SNPs influencing ncRNA (non-coding RNA) expression. It provides information of ncRNA-related eQTLs (Expression quantitative trait locus) across 33 ca...Show Details...
Database maintenance site: RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:Homo sapiens
Description: ChemProteoBase is a database about proteomic profiling of cells treated with chemical drugs based on 2D-DIGE. Each entry contains protein name, position (x, y), Mascot Score, Un...Show Details...
Database maintenance site: Nara Institute of Science and Technology
Organism(s) covered:Homo sapiens
Description: KNApSAcK Biomarker is a database for human biomarkers that provide indication of diseases. The biomarker information, which are biomarker name, related diseases, marker type (me...Show Details...
Database maintenance site: Hiroshima University Faculty of Pharmaceutical Sciences
Organism(s) covered:Homo sapiens
Description: Phos-tag SDS-PAGE database is a collection about Phos-tag (a novel phosphate-binding tag) SDS-PAGE images for analyzing phosphorylated proteins. Each entry contains SDS-PAGE ima...Show Details...
Database maintenance site: Japan Newt Research Community
Organism(s) covered:Cynops pyrrhogaster
Description: IMORI is a database of sequence resources about the Japanese fire bellied newt. It contains sequences from transcriptome data in various stages, such as development, regeneratio...Show Details...
Description: J-amir is a collection of digital data about aquatic macroinvertebrates inhabiting Japan. It contains photo-images and analyzed DNA sequences (partial coding regions of 18S rRNA...Show Details...
Description: ADMIX database is an integrated database about Alzheimer's disease multi-omics data. It contains publicly available data in genomics, epigenomics, transcriptomics and proteomics...Show Details...
Database maintenance site: DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Organism(s) covered:Homo sapiens
Description: NanbyoData provides informative data related to intractable diseases using Nanbyo Disease Ontology (NANDO). Designated intractable diseases and chronic specific pediatric diseas...Show Details...
Description: Translocatome is a database that collects and characterises manually curated and predicted translocating proteins from human cells. The prediction is made by a gradient boosting...Show Details...
Description: Many animal species present sex differences. Sex-associated genes (SAGs), which have female-biased or male-biased expression, have major influences on the remarkable sex differe...Show Details...
Description: Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that gen...Show Details...
Database maintenance site: BTI (Boyce Thompson Institute, Cornell University)
Organism(s) covered:Cucurbitaceae
Description: The recent genome sequence assemblies of major cucurbit crop species, including cucumber, melon, watermelon and pumpkin have made it feasible to use advanced genomic approaches ...Show Details...
Database maintenance site: BII (Bioinformatics Institute, A*STAR)
Organism(s) covered:All
Description: The AlloMAPS database provides data on the energetics of communication in proteins with well-documented allosteric regulation, allosteric signalling in PDBselect chains, and all...Show Details...
Description: The Swissregulon Database contains genome-wide annotations of regulatory sites. The predictions are based on Bayesian probabilistic analysis of a combination of input informatio...Show Details...
Database maintenance site: European Medicines Agency
Organism(s) covered:Homo sapiens
Description: The EU Clinical Trials Register contains information on interventional clinical trials on medicines conducted in the European Union (EU), or the European Economic Area (EEA) whi...Show Details...
Database maintenance site: EMBL-EBI (European Bioinformatics Institute), NCBI (National Center for Biotechnology Information), Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered:All
Description: It is a portal site for the INSDC(International Nucleotide Sequence Database Collaboration), which is an initiative operated between DDBJ, EMBL-EBI and NCBI. Each organization ...Show Details...
Database maintenance site: EMBL-EBI (European Bioinformatics Institute), NCBI (National Center for Biotechnology Information)
Organism(s) covered:Homo sapiens
Description: LRG is a database of stable genomic, transcript and protein reference sequences for reporting clinically relevant sequence variants. NCBI (RefSeq) and EMBL-EBI (Ensembl/GENCODE)...Show Details...
Database maintenance site: Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered:All
Description: DDBJ BioSample is a database to store descriptive information about biological samples used to generate experimental data. The data are shared among DDBJ, EBI and NCBI BioSample...Show Details...
Database maintenance site: ICH (The International Council for Harmonisation of Technical Requirements for Pharmaceuticals for Human Use)
Organism(s) covered:
Description: MedDRA is a standardized medical terminology for regulatory information of medical products. It is available for use in the registration, documentation and safety monitoring of ...Show Details...
Description: Mondo is an ontology for integrating disease definitions. It collects disease definitions and data models from numerous sources, which include HPO, OMIM, SNOMED CT, ICD, PhenoDB...Show Details...
Database maintenance site: McDonnell Genome Institute at Washington University School of Medicine
Organism(s) covered:Homo sapiens
Description: DGIdb is a database about drug-gene interactions and the druggable genome. It collects and integrates drug-gene interactions and gene druggability information from papers, datab...Show Details...
Description: GnomAD is a resource for exome and genome sequencing data from a wide variety of large-scale sequencing projects. It contains following datasets; The v2 data set (GRCh37/hg19) p...Show Details...
Database maintenance site: NCBI (National Center for Biotechnology Information)
Organism(s) covered:Homo sapiens
Description: MedGen is a portal database about conditions and phenotypes related to Medical Genetics. It aggregates terms from the NIH Genetic Testing Registry (GTR), UMLS, HPO, Orphanet, Cl...Show Details...
Description: The Human Phenotype Ontology (HPO) provides a standardized vocabulary of phenotype specialized in human disease. The medical literatures, Orphanet, DECIPHER, and OMIM are used f...Show Details...
Database maintenance site: The McDonnell Genome Institute, Washington University School of Medicine
Organism(s) covered:Homo sapiens
Description: CIViC is a knowledgebase for Clinical Interpretation of Variants in Cancer. It has collected knowledge of the therapeutic, prognostic, diagnostic and predisposing relevance of i...Show Details...
Database maintenance site: World Health Organization
Organism(s) covered:Homo sapiens
Description: This is a website for ICD (International Statistical Classification of Diseases and Related Health Problems) -11, which is an organized collection of global standard terms for h...Show Details...
Description: ChEMBL is a database for bioactive molecules. It collects information of small molecules, such as calculated properties (e.g. logP, Molecular Weight, Lipinski Parameters, etc.) ...Show Details...
Description: INstruct is a database of protein interactome networks in human and six model organisms. In this site, protein-protein interaction interfaces have been identified based on struc...Show Details...
Description: HINT (High-quality INTeractomes) is a database of high-quality protein-protein interactions. The interactions are collected from 8 interactome resources (BioGRID, MINT, iRefWeb,...Show Details...
Description: MushPlant database is a database about toxic plants and mushrooms. It contains statistical data of food poisoning cases caused by toxic plants and mushrooms between 2000 and 201...Show Details...
Database maintenance site: Broad Institute of Harvard and MIT, UCSD (University of California San Diego)
Organism(s) covered:Homo sapiens
Description: MSigDB is a collection of annotated gene sets for use with Enrichment Analysis (GSEA) software which is a computational method that determines whether an a priori defined set of...Show Details...
Database maintenance site: Icahn School of Medicine at Mount Sinai
Organism(s) covered:Homo sapiens | Mus musculus
Description: CREEDS is a knowledgebase for associations between drugs, genes and diseases based on the data from a crowdsourcing microtask project implemented to annotate and reanalyze gene ...Show Details...
Description: Mikan Genome Database (MiGD) is an integrated database for mandarin molecular breeding. It provides the following contents: (1) comparative genome browser which shows genome-wid...Show Details...
Database maintenance site: RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:Homo sapiens
Description: AMED Cardiotoxicity Database is a database about small molecules which bind to various ion channels and potentially cause cardiotoxic risk.It compiles cardiotoxicity-related inf...Show Details...
Description: Development of a Drug Discovery Informatics System is a portal site containing databases and tools for predicting pharmacokinetics and toxicity (cardiotoxicity / hepatotoxicity)...Show Details...
Database maintenance site: EMBL-EBI (European Bioinformatics Institute), The Jackson Laboratory
Organism(s) covered:Mus musculus | Homo sapiens
Description: PDX Finder is an open repository for the upload and storage of clinical, genomic and functional Patient-Derived Xenograph (PDX) data which provides a comprehensive global catalo...Show Details...
Database maintenance site: BIGD (Big Data Center, Beijing Institute of Genomics)
Organism(s) covered:Homo sapiens
Description: LncBook is a curated knowledgebase of human lncRNAs that features a comprehensive collection of human lncRNAs and systematic curation of lncRNAs by multi-omics data integration,...Show Details...
Database maintenance site: BPRC (Beijing Proteome Research Center)
Organism(s) covered:AII
Description: iProX is a public platform for collecting and sharing raw data, analysis results and metadata obtained from proteomics experiments. The iProX repository employs a web-based prot...Show Details...
Description: PreMedKB is a database for integrating information on diseases, genes, variants, drugs, and the relationships between any two or more of these four components. This database con...Show Details...