List of Database Records  (records : )

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Database maintenance site:
Organism(s) covered: Equus caballus | Homo sapiens | Mus musculus | Rattus | Canis lupus familiaris | ...
Description: It is a database for non-B DNAs which do not fall into a right-handed Watson-Crick double-helix. This database provides information of genomic regions predicted to form non-B DN... Show Details...
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Database maintenance site: NIHS (National Institute of Health Sciences)
Organism(s) covered:
Description: It provides information of allergenic proteins and low-molecular weight allergenic compounds. The allergenic proteins have been collected from literature sources and AllergenOnl... Show Details...
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Database maintenance site: Department of Biochemistry, Eötvös Loránd University
Organism(s) covered: Homo sapiens | Eukaryota | Drosophila melanogaster | Saccharomyces cerevisiae | Caenorhabditis elegans | ...
Description: PhaSePro is a database of proteins driving LLPS (liquid-liquid phase separation) in cells. For each of them, this database mainly provides the protein information, the coding ge... Show Details...
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Database maintenance site: Peking University
Organism(s) covered: Homo sapiens | Metazoa | Dictyostelium discoideum | Tetrahymena thermophila | Trypanosoma brucei brucei | ...
Description: PhaSepDB is a database of proteins related to phase separation (PS) and Membraneless organelles (MLOs) . This database mainly contains the protein names, links to Uniprot, codin... Show Details...
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Database maintenance site: University of Toyama Institute of Natural Medicine
Organism(s) covered: Viridiplantae
Description: KampoDB is an integrated database for natural medicines such as herbal medicines. It provides information of kampo formulas, including crude drugs, constituent natural compounds... Show Details...
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Database maintenance site: EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered: Arabidopsis thaliana | Caenorhabditis elegans | Candida albicans | Danio rerio | Dictyostelium discoideum | ...
Description: AlphaFold DB is a database for protein structure predictions for human and 20 other key organisms. Each entry contains basic information about the protein and three separate out... Show Details...
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Database maintenance site: Graduate School of Integrated Sciences for Life, Hiroshima University
Organism(s) covered: Bacteria
Description: It is a set of 16S RNA sequences for metagenomic analysis using kraken2. Sequences with taxonomy ID, accession No. and definition are provided in fasta format. Show Details...
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Database maintenance site: China National Center for Bioinformation / Beijing Institute of Genomics, Chinese
Organism(s) covered: Bacteria | Archaea
Description: PADS Arsenal is a database of genes associated with 18 categories of prokaryotic antiviral defense systems. This database mainly contains Assembly accessions, the number of gene... Show Details...
Database maintenance site: Lécuyer Lab, Institut de Recherches Cliniques de Montéral
Organism(s) covered: Homo sapiens | Caenorhabditis elegans | Danio rerio | Drosophila melanogaster | Mus musculus
Description: oRNAment is a database of putative RBP (RNA-binding-protein) binding site instances in coding and non-coding RNA in five species. For each RBP, this database mainly provides an ... Show Details...
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Database maintenance site: Institute of Structural and Molecular Biology, Birkbeck College
Organism(s) covered: Homo sapiens
Description: OGRDB is a database of the repertoires of human germline receptor alleles. Each data is submitted by researchers and reviewed and accepted by IARC (International Agency for Rese... Show Details...
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Database maintenance site: Huazhong Agricultural University, College of Informatics
Organism(s) covered: Homo sapiens
Description: ncRNA-eQTL is a database of SNPs influencing ncRNA (non-coding RNA) expression. It provides information of ncRNA-related eQTLs (Expression quantitative trait locus) across 33 ca... Show Details...
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Database maintenance site: RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered: Homo sapiens
Description: ChemProteoBase is a database about proteomic profiling of cells treated with chemical drugs based on 2D-DIGE. Each entry contains protein name, position (x, y), Mascot Score, Un... Show Details...
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Database maintenance site: Nara Institute of Science and Technology
Organism(s) covered: Homo sapiens
Description: KNApSAcK Biomarker is a database for human biomarkers that provide indication of diseases. The biomarker information, which are biomarker name, related diseases, marker type (me... Show Details...
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Database maintenance site: Hiroshima University Faculty of Pharmaceutical Sciences
Organism(s) covered: Homo sapiens
Description: Phos-tag SDS-PAGE database is a collection about Phos-tag (a novel phosphate-binding tag) SDS-PAGE images for analyzing phosphorylated proteins. Each entry contains SDS-PAGE ima... Show Details...
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Database maintenance site: Japan Newt Research Community
Organism(s) covered: Cynops pyrrhogaster
Description: IMORI is a database of sequence resources about the Japanese fire bellied newt. It contains sequences from transcriptome data in various stages, such as development, regeneratio... Show Details...
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Database maintenance site: Osaka Prefecture University
Organism(s) covered: Ephemeroptera | Odonata | Plecoptera | Hemiptera | Megaloptera | ...
Description: J-amir is a collection of digital data about aquatic macroinvertebrates inhabiting Japan. It contains photo-images and analyzed DNA sequences (partial coding regions of 18S rRNA... Show Details...
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Database maintenance site:
Organism(s) covered: Homo sapiens
Description: ADMIX database is an integrated database about Alzheimer's disease multi-omics data. It contains publicly available data in genomics, epigenomics, transcriptomics and proteomics... Show Details...
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Database maintenance site: DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Organism(s) covered: Homo sapiens
Description: NanbyoData provides informative data related to intractable diseases using Nanbyo Disease Ontology (NANDO). Designated intractable diseases and chronic specific pediatric diseas... Show Details...
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Database maintenance site: LINK-group
Organism(s) covered: Homo sapiens
Description: Translocatome is a database that collects and characterises manually curated and predicted translocating proteins from human cells. The prediction is made by a gradient boosting... Show Details...
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Database maintenance site: College of Life Science and Technology, Huazhong Agricultural University
Organism(s) covered: Bos taurus | Caenorhabditis | Danio rerio | Drosophila | Equus caballus | ...
Description: Many animal species present sex differences. Sex-associated genes (SAGs), which have female-biased or male-biased expression, have major influences on the remarkable sex differe... Show Details...
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Database maintenance site: EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered: All
Description: Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that gen... Show Details...
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Database maintenance site: BTI (Boyce Thompson Institute, Cornell University)
Organism(s) covered: Cucurbitaceae
Description: The recent genome sequence assemblies of major cucurbit crop species, including cucumber, melon, watermelon and pumpkin have made it feasible to use advanced genomic approaches ... Show Details...
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Database maintenance site: BII (Bioinformatics Institute, A*STAR)
Organism(s) covered: All
Description: The AlloMAPS database provides data on the energetics of communication in proteins with well-documented allosteric regulation, allosteric signalling in PDBselect chains, and all... Show Details...
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Database maintenance site: SIB (Swiss Institute of Bioinformatics)
Organism(s) covered: Bacillus subtilis | Brucella suis | Burkholderia pseudomallei K96243 | Burkholderia thailandensis E264 | Chlamydophila caviae | ...
Description: The Swissregulon Database contains genome-wide annotations of regulatory sites. The predictions are based on Bayesian probabilistic analysis of a combination of input informatio... Show Details...
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Database maintenance site: European Medicines Agency
Organism(s) covered: Homo sapiens
Description: The EU Clinical Trials Register contains information on interventional clinical trials on medicines conducted in the European Union (EU), or the European Economic Area (EEA) whi... Show Details...
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Database maintenance site: EMBL-EBI (European Bioinformatics Institute), NCBI (National Center for Biotechnology Information), Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered: All
Description: It is a portal site for the INSDC(International Nucleotide Sequence Database Collaboration), which is an initiative operated between DDBJ, EMBL-EBI and NCBI. Each organization ... Show Details...
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Database maintenance site: EMBL-EBI (European Bioinformatics Institute), NCBI (National Center for Biotechnology Information)
Organism(s) covered: Homo sapiens
Description: LRG is a database of stable genomic, transcript and protein reference sequences for reporting clinically relevant sequence variants. NCBI (RefSeq) and EMBL-EBI (Ensembl/GENCODE)... Show Details...
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Database maintenance site: Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered: All
Description: DDBJ BioSample is a database to store descriptive information about biological samples used to generate experimental data. The data are shared among DDBJ, EBI and NCBI BioSample... Show Details...
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Database maintenance site: ICH (The International Council for Harmonisation of Technical Requirements for Pharmaceuticals for Human Use)
Organism(s) covered:
Description: MedDRA is a standardized medical terminology for regulatory information of medical products. It is available for use in the registration, documentation and safety monitoring of ... Show Details...
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Database maintenance site: Monarch Initiative
Organism(s) covered: Homo sapiens
Description: Mondo is an ontology for integrating disease definitions. It collects disease definitions and data models from numerous sources, which include HPO, OMIM, SNOMED CT, ICD, PhenoDB... Show Details...
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Database maintenance site: McDonnell Genome Institute at Washington University School of Medicine
Organism(s) covered: Homo sapiens
Description: DGIdb is a database about drug-gene interactions and the druggable genome. It collects and integrates drug-gene interactions and gene druggability information from papers, datab... Show Details...
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Database maintenance site: Genome Aggregation Database Consortium
Organism(s) covered: Homo sapiens
Description: GnomAD is a resource for exome and genome sequencing data from a wide variety of large-scale sequencing projects. It contains following datasets; The v2 data set (GRCh37/hg19) p... Show Details...
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Database maintenance site: NCBI (National Center for Biotechnology Information)
Organism(s) covered: Homo sapiens
Description: MedGen is a portal database about conditions and phenotypes related to Medical Genetics. It aggregates terms from the NIH Genetic Testing Registry (GTR), UMLS, HPO, Orphanet, Cl... Show Details...
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Database maintenance site: The Jackson Laboratory
Organism(s) covered: Homo sapiens
Description: The Human Phenotype Ontology (HPO) provides a standardized vocabulary of phenotype specialized in human disease. The medical literatures, Orphanet, DECIPHER, and OMIM are used f... Show Details...
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Database maintenance site: The McDonnell Genome Institute, Washington University School of Medicine
Organism(s) covered: Homo sapiens
Description: CIViC is a knowledgebase for Clinical Interpretation of Variants in Cancer. It has collected knowledge of the therapeutic, prognostic, diagnostic and predisposing relevance of i... Show Details...
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Database maintenance site: World Health Organization
Organism(s) covered: Homo sapiens
Description: This is a website for ICD (International Statistical Classification of Diseases and Related Health Problems) -11, which is an organized collection of global standard terms for h... Show Details...
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Database maintenance site: EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered:
Description: ChEMBL is a database for bioactive molecules. It collects information of small molecules, such as calculated properties (e.g. logP, Molecular Weight, Lipinski Parameters, etc.) ... Show Details...
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Database maintenance site: Cornell University
Organism(s) covered: Homo sapiens | Arabidopsis thaliana | Caenorhabditis elegans | Drosophila melanogaster | Drosophila melanogaster | ...
Description: INstruct is a database of protein interactome networks in human and six model organisms. In this site, protein-protein interaction interfaces have been identified based on struc... Show Details...
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Database maintenance site: Cornell University
Organism(s) covered: Homo sapiens | Saccharomyces cerevisiae | Schizosaccharomyces pombe | cDrosophila melanogaster | Caenorhabditis elegans | ...
Description: HINT (High-quality INTeractomes) is a database of high-quality protein-protein interactions. The interactions are collected from 8 interactome resources (BioGRID, MINT, iRefWeb,... Show Details...
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Database maintenance site: NIHS (National Institute of Health Sciences)
Organism(s) covered: Entoloma rhodopolium | Omphalotus guepiniformis | Colchicum autumnale | Narcissus | Veratrum | ...
Description: MushPlant database is a database about toxic plants and mushrooms. It contains statistical data of food poisoning cases caused by toxic plants and mushrooms between 2000 and 201... Show Details...
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Database maintenance site: Broad Institute of Harvard and MIT, UCSD (University of California San Diego)
Organism(s) covered: Homo sapiens
Description: MSigDB is a collection of annotated gene sets for use with Enrichment Analysis (GSEA) software which is a computational method that determines whether an a priori defined set of... Show Details...
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Database maintenance site: Icahn School of Medicine at Mount Sinai
Organism(s) covered: Homo sapiens | Mus musculus
Description: CREEDS is a knowledgebase for associations between drugs, genes and diseases based on the data from a crowdsourcing microtask project implemented to annotate and reanalyze gene ... Show Details...
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Database maintenance site: NARO (National Agriculture and Food Research Organization)
Organism(s) covered: Citrus unshiu | Citrus trifoliata | Citrus clementina | Citrus sinensis | Citrus maxima | ...
Description: Mikan Genome Database (MiGD) is an integrated database for mandarin molecular breeding. It provides the following contents: (1) comparative genome browser which shows genome-wid... Show Details...
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Database maintenance site: RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered: Homo sapiens
Description: AMED Cardiotoxicity Database is a database about small molecules which bind to various ion channels and potentially cause cardiotoxic risk.It compiles cardiotoxicity-related inf... Show Details...
Database maintenance site: Development of a Drug Discovery Informatics System
Organism(s) covered: Homo sapiens | Rattus norvegicus
Description: Development of a Drug Discovery Informatics System is a portal site containing databases and tools for predicting pharmacokinetics and toxicity (cardiotoxicity / hepatotoxicity)... Show Details...
Database maintenance site: Institute of Biophysics, Chinese Academy of Sciences
Organism(s) covered: Homo sapiens | Mus musculus | Rattus norvegicus | Drosophila melanogaster | Caenorhabditis elegans | ...
Description: piRBase stores information on piRNAs and piRNA-associated data to support piRNA functional analysis. Show Details...
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Database maintenance site: EMBL-EBI (European Bioinformatics Institute), The Jackson Laboratory
Organism(s) covered: Mus musculus | Homo sapiens
Description: PDX Finder is an open repository for the upload and storage of clinical, genomic and functional Patient-Derived Xenograph (PDX) data which provides a comprehensive global catalo... Show Details...
Database maintenance site: BIGD (Big Data Center, Beijing Institute of Genomics)
Organism(s) covered: Homo sapiens
Description: LncBook is a curated knowledgebase of human lncRNAs that features a comprehensive collection of human lncRNAs and systematic curation of lncRNAs by multi-omics data integration,... Show Details...
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Database maintenance site: BPRC (Beijing Proteome Research Center)
Organism(s) covered: AII
Description: iProX is a public platform for collecting and sharing raw data, analysis results and metadata obtained from proteomics experiments. The iProX repository employs a web-based prot... Show Details...
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Database maintenance site: Fudan University
Organism(s) covered:
Description: PreMedKB is a database for integrating information on diseases, genes, variants, drugs, and the relationships between any two or more of these four components. This database con... Show Details...