Description: The ITHANET Portal represents an expanding resource for clinicians and researchers dealing with haemoglobinopathies and a port of call for patients in search of professional adv...Show Details...
Database maintenance site: DDMoRe (Drug Disease Model Resource)
Organism(s) covered:
Description: ProbOnto, is an ontology-based knowledge base of probability distributions, featuring more than 150 uni- and multivariate distributions with their defining functions, characteri...Show Details...
Database maintenance site: IMI (Institute of Medical Informatics, University of Muenster)
Organism(s) covered:Homo sapiens
Description: MDM-Portal (Medical Data-Models) is a meta-data registry for creating, analysing, sharing and reusing medical forms, developed by the Institute of Medical Informatics, Universit...Show Details...
Database maintenance site: IRCCS (Istituto di Ricovero e Cura a Carattere Scientifico)
Organism(s) covered:Homo sapiens
Description: CLIMA 2 is the result of an integration effort aimed at including all certified STR profiles of human cell lines in a unique database. The contents of the database are dynamical...Show Details...
Description: The CancerData site is an effort of the Medical Informatics and Knowledge Engineering team (MIKE for short) of Maastro Clinic, Maastricht, The Netherlands. It offers a central, ...Show Details...
Description: OmicsDB is a database for the storage and management of omics data and auxiliary information. The database contains cross-species, cross-technique and cross-types. It offers use...Show Details...
Database maintenance site: BIGD (Big Data Center, Beijing Institute of Genomics)
Organism(s) covered:Canis lupus
Description: IDog is an integrated resource for domestic dog (Canis lupus familiaris) and wild canids that provides the worldwide dog research community a variety of data services. This incl...Show Details...
Database maintenance site: Stanford Center for Biomedical Informatics Research
Organism(s) covered:
Description: BioPortal is a Web portal that provides access to a library of biomedical ontologies and terminologies developed in Web Ontology Language (OWL), Resource Description Framework (...Show Details...
Description: The Coral Trait Database is a growing compilation of scleractinian coral life history trait, phylogenetic and biogeographic data. As of today, there are 68247 coral observations...Show Details...
Description: RBP-Var is a database of functional variants involved in regulation mediated by RNA-binding proteins. Human genome variants can change the RNA structure and affect RNA-protein i...Show Details...
Database maintenance site: Churchill Group, The Jackson Laboratory, IGMM (MRC Institute of Genetics & Molecular Medicine, University of Edinburgh)
Organism(s) covered:Mus musculus
Description: EMAGE is a database of in situ gene expression data in the mouse embryo. mRNA in situ hybridisation, protein immunohistochemistry, in situ transgenic reporter data, and in situ ...Show Details...
Database maintenance site: Churchill Group, The Jackson Laboratory, IGMM (MRC Institute of Genetics & Molecular Medicine, University of Edinburgh)
Organism(s) covered:Mus musculus
Description: The e-Mouse Atlas (EMA) is a detailed model of the developing mouse. Its purpose is not only to provide information about the shape, gross anatomy and detailed histological stru...Show Details...
Description: Gemma is a database for the meta-analysis, re-use and sharing of genomics data, currently primarily targeted at the analysis of gene expression profiles. Gemma contains data fro...Show Details...
Description: STRENDA DB is a storage and search platform supported by the Beilstein-Institut that incorporates the STRENDA Guidelines in a user-friendly, web-based system. If you are an auth...Show Details...
Description: data.eNanoMapper.net is a public database hosting nanomaterials characterization data and biological and toxicological information. The database provides various possibilities t...Show Details...
Description: MetaNetX/MNXref is a database for reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks. The tools developed at MetaNetX are ...Show Details...
Database maintenance site: Francis Crick Institute
Organism(s) covered:Mus musculus
Description: Initiated in 2013, DMDD has the ambitious goal of identifying all embryonic lethal knockout lines made at the Wellcome Trust Sanger institute, through their work as a major cent...Show Details...
Description: The Type 2 Diabetes Knowledge Portal is an open-access resource for human genetic information on type 2 diabetes (T2D). It is a central repository for data from large genomic st...Show Details...
Organism(s) covered:Caenorhabditis | Drosophila | Homo sapiens | Mus musculus
Description: The ENCODE (Encyclopedia of DNA Elements) Consortium is an international collaboration of research groups funded by the National Human Genome Research Institute (NHGRI). The goa...Show Details...
Database maintenance site: IFC-CNR (Institute of Clinical Physiology), Icahn School of Medicine at Mount Sinai, ITT (Institute of Informatics and Telematics, National Research Council), Ohio State University, University of Catania
Description: The miRandola database is the first resource for extracellular circulating RNAs. The first version of the database has been published on Plos One in 2012. It mainly contains inf...Show Details...
Description: Genomics England PanelApp is a publically-available knowledgebase that allows virtual gene panels related to human disorders to be created, stored and queried. It includes a cro...Show Details...
Database maintenance site: FDA (United States Food and Drug Administration)
Organism(s) covered:Homo sapiens
Description: The Global Unique Device Identification Database (GUDID - pronounced "Good ID") is a database administered by the FDA as part of the UDI system.The GUDID contains device identif...Show Details...
Database maintenance site: Bujnicki Lab, Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw (IIMCB)
Description: MODOMICS is the first comprehensive database system for biology of RNA modification. It integrates information about the chemical structure of modified nucleosides, their locali...Show Details...
Database maintenance site: iSCB (Laboratory of Integrative Structural & Chemical Biology)
Organism(s) covered:All
Description: 2P2Idb is a hand-curated structural database dedicated to the modulation of protein-protein interactions (PPIs). It includes all interactions for which both the protein-protein ...Show Details...
Description: The Comparative Toxicogenomics Database (CTD) advances understanding of the effects of environmental chemicals on human health. Biocurators manually curate chemical-gene, chemic...Show Details...
Database maintenance site: EMBL-EBI (European Bioinformatics Institute), HLA Informatics Group, Anthony Nolan Research Institute
Organism(s) covered:All
Description: The Immuno Polymorphism Database (IPD), was developed in 2003 to provide a centralised system for the study of polymorphism in genes of the immune system.Show Details...
Description: The PlantRNA database compiles tRNA gene sequences retrieved from fully annotated plant nuclear, plastidial and mitochondrial genomes. For each tRNA gene, the linear secondary s...Show Details...
Database maintenance site: Cambridge Systems Biology Centre, University of Cambridge, EMBL (European Molecular Biology Laboratory)
Organism(s) covered:All
Description: MetaboLights is a database is a collection of metabolite structures. This resource provides information on the compound origins,the biological roles, locations and concentration...Show Details...
Database maintenance site: Division Signaling and Functional Genomics, German Cancer Research Center (DKFZ) and University of Heidelberg
Organism(s) covered:Drosophila melanogaster | Homo sapiens
Description: The GenomeRNAi database collects RNAi phenotypes recorded in the literature for Homo sapiens and Drosophila melanogaster, as well as details on RNAi reagents. The data is well i...Show Details...
Database maintenance site: Fiona Brinkman Laboratory, Simon Fraser University
Organism(s) covered:Archaea | Bacteria
Description: OrtholugeDB contains Ortholuge-based orthology predictions for completely sequenced bacterial and archaeal genomes. It is also a resource for reciprocal best BLAST-based ortholo...Show Details...
Database maintenance site: Shanghai Jiao Tong University
Organism(s) covered:Bacteria
Description: A web-based bacterial type IV secretion system resource for type IV secretion systems (T4SSs) and cognate effectors in bacteria.Show Details...
Description: PTMCode is a resource of known and predicted functional associations between protein post-translational modifications (PTMs) within and between interacting proteins.Show Details...
Description: The Human Ageing Genomic Resources (HAGR) is a collection of databases and tools for the biology and genetics of ageing. HAGR features several databases with high-quality, manua...Show Details...
Database maintenance site: Karr Lab, Institute for Multiscale Biology & Genomics
Organism(s) covered:Mycoplasma genitalium
Description: WholeCellKB is a collection of open-access model organism databases specifically designed to enable whole-cell models. Currently, WholeCellKB contains a database of Mycoplasma g...Show Details...
Description: The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae (also known as Baker's yeast a...Show Details...
Description: WikiPathways is an open, collaborative platform dedicated to the curation of biological pathways. WikiPathways was established to facilitate the contribution and maintenance of ...Show Details...
Description: The Virus Pathogen Database and Analysis Resource (ViPR) is an integrated repository of data and analysis tools for multiple virus families, supported by the National Institute ...Show Details...
Database maintenance site: Department of Biomolecular Engineering, University of California Santa Cruz, Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz, University of California
Description: The UCSC Archaeal Genome Browser is a window on the biology of more than 100 microbial species from the domain Archaea. Basic gene annotation is derived from NCBI Genbank/RefSeq...Show Details...
Database maintenance site: National University of Singapore
Organism(s) covered:All
Description: The Therapeutic Target Database provides information about therapeutic protein and nucleic acid targets, the targeted disease, pathway information and the corresponding drugs di...Show Details...
Description: The Termini-Oriented Protein Function INferred Database (TopFIND) is an integrated knowledgebase focused on protein termini, their formation by proteases and functional implicat...Show Details...
Description: ProPortal is a database containing genomic, metagenomic, transcriptomic and field data for the marine cyanobacterium Prochlorococcus. They provide a source of cross-referenced d...Show Details...
Description: The Prokaryotic Operon DataBase (ProOpDB) constitutes one of the most precise and complete repository of operon predictions in our days. Using our novel and highly accurate oper...Show Details...
Database maintenance site: Center for Computational and Integrative Biology
Organism(s) covered:Homo sapiens | Mus musculus
Description: PrimerBank is a public resource for PCR primers. These primers are designed for gene expression detection or quantification (real-time PCR). PrimerBank contains over 306,800 pri...Show Details...
Database maintenance site: Department of Biochemistry, University of Cambridge, NCBS (National Center for Biological Sciences), Department of Crystallography, Birkbeck College, University of London
Organism(s) covered:All
Description: PASS2 contains alignments of structural motifs of protein superfamilies. PASS2 is an automatic version of the original superfamily alignment database, CAMPASS (CAMbridge databas...Show Details...
Database maintenance site: CALIPHO (Computer and Laboratory Investigation of Proteins of Human Origin Group, Swiss Institute of Bioinformatics), SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:Homo sapiens
Description: neXtProt is a comprehensive human-centric discovery platform, offering its users a seamless integration of and navigation through protein-related data.Show Details...
Database maintenance site: KOBIC(Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology)
Organism(s) covered:Homo sapiens
Description: Human Integrated Pathway Database (hiPathDB) provides two different types of integration. The pathway-level integration is a simple collection of individual pathways as describe...Show Details...
Description: The Ebola and Hemorrhagic Fever Virus Database stems from the Hemorrhagic Fever Viruses (HFV) Database Project founded by Dr. Carla Kuiken in 2009 at the Los Alamos National Lab...Show Details...
Description: BRCA Share is a novel gene datashare initiative that provides scientists and commercial laboratory organizations around the world with open access to BRCA Share (formerly UMD-BR...Show Details...
Description: VIRsiRNAdb contains information on experimentally validated Viral siRNA/shRNA which target viral genome regions. It provides efficacy information where available, as well as the...Show Details...
Database maintenance site: IBI (Institute for Biomedical Informatics, University of Pennsylvania), Diana Lab Group, BSRC (Biomedical Sciences Research Center Alexander Fleming)
Description: DIANA-TarBase was initially released in 2006 and it was the first database aiming to catalogue published experimentally validated miRNA:gene interactions. DIANA-TarBase (v7.0), ...Show Details...
