Description: hGTOP is a database of human, mouse, rat proteins identified in the genome, focuses on a structural annotation. The original GTOP (https://integbio.jp/dbcatalog/en/record/nbdc00...Show Details...
Description: VaProS is a new data cloud for Structural Life Science, integrates different databases/tools to provides protein/genome information for researchers. VaProS accepts keywords, DNA...Show Details...
Database maintenance site: Iwate Tohoku Medical Megabank Organization
Organism(s) covered:Homo sapiens
Description: iMETHYL is an integrative multi-omics (methylome, transcriptome, and genome) database. These data were obtained from WGBS, WGS, and RNA-Seq for CD4+ T-lymphocytes, monocytes, an...Show Details...
Database maintenance site: The University of Tokyo Graduate School of Science The Misaki Marine Biological Station
Organism(s) covered:Anneissia japonica
Description: Misaki Marine Biological Station, University of Tokyo, participates in National Bio Resource Project for collection, maintenance and distribution of living juveniles and adults,...Show Details...
Database maintenance site: RIKEN CBS (RIKEN Center for Brain Science)
Organism(s) covered:Callithrix jacchus
Description: The Marmoset Gene Atlas provides a whole brain, high-resolution gene expression atlas in the common marmoset (Callithrix jacchus). It provides in situ hybridization (ISH) data ...Show Details...
Database maintenance site: RIKEN CBS (RIKEN Center for Brain Science), Brain/MINDS Database Council
Organism(s) covered:Callithrix jacchus | Homo sapiens
Description: The Brain/MINDS Data Portal shares the data being produced in the Brain/MINDS project. The common marmoset (Callithrix jacchus) 3D reference brain atlas is available for downloa...Show Details...
Description: GenomeSync is a large database of genome sequences mostly from NCBI Assembly. Once GenomeSync is downloaded using Syncthing software, a local copy of the database is continuousl...Show Details...
Description: GenEpid-J is an integrated database of pathogen genomics and epidemiology focused on plasmids involving in the antimicrobial resistance.Show Details...
Database maintenance site: Naturalis Biodiversity Center
Organism(s) covered:all
Description: Linnaeus NG is a data management system for species information developed and maintained by Naturalis Biodiversity Center. It contains a wide variety of information about taxa. ...Show Details...
Description: GlyCosmos Portal is a portal site of glycoscience-related web resources, which includes databases and repositories for glycogenes, glycoconjugates such as glycoproteins and glyc...Show Details...
Database maintenance site: Niigata University Faculty of Engineering Department of Information Engineering
Organism(s) covered:Bacteria | Archaea | Viruses
Description: tRNADB-CE is a database of manually curated tRNA gene information. It contains tRNA sequences that have been evaluated experimentally after initial identification by computation...Show Details...
Description: SGN is a database of genome and phenotype data for species in the Solanaceae and their close relatives. It provides genome maps and sequences, QTLs, RNA-seq, and microarray data...Show Details...
Database maintenance site: Department of Molecular Genetics, Brain Research Institute, Niigata University
Organism(s) covered:Homo sapiens
Description: JFADdb contains information about mutations in genes linked to dominantly inherited Alzheimer's disease (APP, PSEN1, and PSEN2) as well as FTDP-17 (MAPT and GRN) in the Japanese...Show Details...
Description: The site introduces evidence-based information on how to consider the relative advantages and disadvantages of complementary and alternative medicine including folk therapy. The...Show Details...
Database maintenance site: ATCC Standards Development Organisation, Cell Networks, University of Heidelberg, Genetica DNA Laboratories, JCRB Cell Bank (Japanese Collection of Research Bioresources Cell Bank), RIKEN BRC (RIKEN BioResource Research Center), SIB (Swiss Institute of Bioinformatics), GBSI (UK Global Biological Standards Institute)
Organism(s) covered:All
Description: This database lists cell lines that are currently known to be cross-contaminated or otherwise misidentified.Show Details...
Description: GenoList is an integrated environment for comparative exploration of microbial genomes. The current release integrates genome data for over 700 species (Genome Reviews). The que...Show Details...
Database maintenance site: SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:All
Description: Patent data resources at the EBI contain patent abstracts, patent chemical compounds, patent sequences and patent equivalents. Multiple sets of patent sequences are available at...Show Details...
Description: The CFGP (Comparative Fungal Genomics Platform) was designed for comparative genomics projects with diverse fungal genomes.Show Details...
Database maintenance site: AgBase, Mississippi State University
Organism(s) covered:Metazoa | Viridiplantae
Description: AgBase is a curated, open-source, Web-accessible resource for functional analysis of agricultural plant and animal gene products.Show Details...
Database maintenance site: Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College (CAMS&PUMC)
Organism(s) covered:Bacteria
Description: VFDB is an integrated and comprehensive database of virulence factors for bacterial pathogens (also including Chlamydia and Mycoplasma).Show Details...
Description: Drug-related information: medical indications, adverse drug effects, drug metabolism and Gene Ontology terms of the target proteins.Show Details...
Database maintenance site: University College London, Research Department of Structural and Molecular Biology, Institute of Structural and Molecular Biology, University College London
Organism(s) covered:All
Description: Gene3D takes CATH domain families (from PDB structures) and assigns them to the millions protein sequences (using Hidden Markov models generated from HMMER) with no PDB structures.Show Details...
Description: OGEE is an Online GEne Essentiality database. Gene essentiality is not a static and binary property, rather a context-dependent and evolvable property in all forms of life. In O...Show Details...
Description: The Integrated Microbial Genomes (IMG) system serves as a community resource for analysis and annotation of genome and metagenome datasets in a comprehensive comparative context...Show Details...
Database maintenance site: Center for Comparative Functional Genomics, Department of Biology, New York University, MDC (Max Delbrueck Center for Molecular Medicine), Max Planck Institute for Biology of Ageing, Howard Hughes Medical Institute
Organism(s) covered:Caenorhabditis elegans | Homo sapiens | Mus musculus
Description: Database of RNA interactions in post-transcriptional regulation.Show Details...