Database maintenance site: SBCB Unit, Department of Biochemistry, University of Oxford
Organism(s) covered:All
Description: MemProtMD is a database about intrinsic membrane protein structures derived from Protein Data Bank, which inserted into simulated lipid bilayers using Coarse-Grained Self Assemb...Show Details...
Database maintenance site: Computational Epigenomics Lab, Evolutionary Genomics and Bioinformatics Group, Dept. of Genetics, Inst. of Biotechnology, University of Granada
Organism(s) covered:Homo sapiens
Description: LipDB is a database about small RNA sequencing profiles in liquid biopsy studies. All data in this database were acquired from SRA database, and users can browse a list of studi...Show Details...
Database maintenance site: Icahn School of Medicine at Mount Sinai
Organism(s) covered:All
Description: KinaMetrix is a database to investigate kinase conformations and inhibitor space. It contains the geometric descriptors describing kinase conformation, and the information of li...Show Details...
Database maintenance site: National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences
Organism(s) covered:Canidae
Description: iDog is an integrated resource for domestic dog (Canis lupus familiaris) and wild canids. It includes information about Genes, Genomes, SNPs, Breed/Disease Traits, Gene Expressi...Show Details...
Description: HmtVar is a manually-curated database for variability and pathogenicity information about human mtDNA. It collects variation data from HmtDB (https://www.hmtdb.uniba.it), which ...Show Details...
Database maintenance site: Vanderbilt University Medical Center
Organism(s) covered:Homo sapiens
Description: HACER is a database of human active enhancer to interpret regulatory variants, which includes active, transcribed enhancers derived from GRO-seq, PRO-seq and CAGE data. It provi...Show Details...
Database maintenance site: Chinese Academy of Sciences
Organism(s) covered:Bacteria | Archaea
Description: gcMeta is an integrated platform for microbiome research. It contains information and data about microbiome research studies, such as study name, project ID, descriptions, sampl...Show Details...
Database maintenance site: UTHealth (University of Texas Health Science Center at Houston)
Organism(s) covered:Homo sapiens
Description: FusionGDB is a database about fusion gene annotation. This database collects data of clinically relevant fusion genomes from three representative fusion gene resources: the impr...Show Details...
Database maintenance site: Harbin Medical University
Organism(s) covered:Homo sapiens
Description: EWASdb is a comprehensive database for epigenome-wide association studies (EWAS). Users can search studies by information of single epi-marker used in studies, KEGG pathway and ...Show Details...
Database maintenance site: National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences
Organism(s) covered:Homo sapiens
Description: EWAS Atlas is an integrated database focusing on DNA methylation which is one of the key epigenetic marks. It contains manually curated data of EWAS knowledge from extensive pub...Show Details...
Database maintenance site: College of Life Science and Technology, HUST
Organism(s) covered:Homo sapiens
Description: EVmiRNA is a comprehensive database of miRNA in extracellular vesicles. It provides miRNA expression profiles, miRNA related drug, miRNA regulated pathways, miRNA function and r...Show Details...
Database maintenance site: The Encyclopedia of Traditional Chinese Medicine
Organism(s) covered:Embryophyta
Description: ETCM is a comprehensive database for the commonly used herbs and traditional Chinese medicines (TCMs). It provides information of material plants, such as Chinese name, scientif...Show Details...
Database maintenance site: School of Life Sciences, The Chinese University of Hong Kong
Organism(s) covered:Eukaryota
Description: ENPD is a database for nucleic acid binding proteins (NBPs) and their functional information. It contains information of NBPs (DNA binding proteins: DBPs, RNA-binding proteins: ...Show Details...
Description: EndoDB is an expert curated added-value database of publicly available endothelial (single) cell gene expression data. It collects endothelial transcriptomics datasets including...Show Details...
Database maintenance site: NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:Bombyx mori
Description: This is a collection of tissue specific transcriptomic data for Bombyx mori. RNAseq was applied for multiple tissues in Bombyx mori P50T strain using new reference genome data. ...Show Details...
Database maintenance site: NINDS (National Institute of Neurological Disorders & Stroke)
Organism(s) covered:All
Description: EncoMPASS is a database for relating integral membrane proteins from the points of view of their sequence, structure, and quaternary and internal symmetries. Analysis was done f...Show Details...
Database maintenance site: National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences
Organism(s) covered:Homo sapiens | Viruses
Description: EDK is a curated knowledgebase of associations between abnormal RNA modifications and human diseases. It provides comprehensive integration of knowledge on abnormal RNA editing ...Show Details...
Description: dbAMP is a database of anti-microbial peptides (AMPs) which are naturally encoded by genes and generally containing 12-100 amino acids. It provides information of antibacterial ...Show Details...
Description: DSMNC is a comprehensive catalogue of somatic single nucleotide variations (SNVs) occurring in a normal cell from various human and mouse normal tissues. Each entry contains chr...Show Details...
Description: CRISPRlnc is a manually curated database of validated CRISPR/Cas9 sgRNAs for lncRNAs. The ID, position in the genome, sequence and functional description of these lncRNAs, as we...Show Details...
Description: CoevDB is a database of intramolecular coevolution among over 8,000 protein-coding genes of the bony vertebrates (Euteleostomi clade). Prediction of coevolution can be obtained ...Show Details...
Database maintenance site: National University of Singapore
Organism(s) covered:Viridiplantae | Homo sapiens
Description: The CMAUP database provides collective molecular activities of useful plants (e.g. medicinal and food plants). Data are manually collected from literatures or from other related...Show Details...
Description: ChIPprimersDB is a public repository of verified qPCR primers for chromatin immunoprecipitation (ChIP). All primers listed are published in peer-reviewed manuscripts and a repor...Show Details...
Database maintenance site: Kunming Institute of Zoology, Chinese Academy of Sciences
Organism(s) covered:Tupaia belangeri
Description: Tree Shrew Database is a knowledge base for Chinese tree shrew genome biology. It provides a comprehensive annotation for reference genome of the Chinese tree shrew, gene expres...Show Details...
Database maintenance site: Wellcome Sanger Institute
Organism(s) covered:Homo sapiens
Description: The Cell Model Passports provides access to a cancer cell line and organoid model database containing curated patient, sample and model relationship information as well as genom...Show Details...
Database maintenance site: Harbin Medical University
Organism(s) covered:Homo sapiens | Mus musculus
Description: CellMarker database provides a manually curated, comprehensive and accurate resource of cell markers for various cell types in tissues of human and mouse. Users can search for c...Show Details...
Database maintenance site: Huazhong University of Science and Technology
Organism(s) covered:Homo sapiens
Description: CancerSplicingQTL is a database to provide a comprehensive resource of splicing quantitative trait loci (sQTLs) across 33 human cancer types. Users can search, browse and downlo...Show Details...
Database maintenance site: Harbin Medical University
Organism(s) covered:Homo sapiens
Description: CancerSEA provides an atlas of cancer single-cell functional states and associates protein-coding genes (PCGs) and lncRNAs with these functional states at single-cell level. Sin...Show Details...
Database maintenance site: Edward Via College of Osteopathic Medicine
Organism(s) covered:Homo sapiens
Description: Comparative Analysis of Germline Microsatellites (CAGm) is a database of human germline microsatellites from 2529 individuals in the 1000 genomes project. Users can query genoty...Show Details...
Database maintenance site: Helmholtz Centre for Infection Research
Organism(s) covered:Pseudomonas aeruginosa
Description: BACTOME provides detailed information on a large collection of clinical Pseudomonas aeruginosa isolates. It includes gene sequence information, transcriptome profiles as well as...Show Details...
AWESOME: A Website Exhibits SNP On Modification Event
Database maintenance site: Tongji Medical College Huazhong University of Sciences and Technology
Organism(s) covered:Homo sapiens
Description: AWESOME is a comprehensive database to predict SNPs that may gain/loss protein post-translational modfication (PTM) sites. The PTM changes affected by SNPs were annotated by exp...Show Details...
Database maintenance site: USC (University of Southern California)
Organism(s) covered:cellular organisms
Description: Ancestral Genomes is a resource for the reconstructions of the protein-coding gene content of common ancestors of modern-day organisms. The reconstructed genes are based on the ...Show Details...
Database maintenance site: Institute of Molecular Genetics of the ASCR
Organism(s) covered:Homo sapiens
Description: AmtDB is a database of ancient human mitochondrial genomes. It provides both the mtDNA sequences (in FASTA format) and the metadata for the samples, freely accessible for downlo...Show Details...
Database maintenance site: UCSD (University of California San Diego)
Organism(s) covered:Thermotoga maritima MSB8 | Methylorubrum extorquens AM1 | Escherichia coli B str. REL606 | Escherichia coli str. K-12 substr. MG1655 | Escherichia coli BW25113
Description: ALEdb is a database of mutations from adaptive laboratory evolution experimentation. The mutations stored at ALEdb are characterized by the genome position, the affected gene, t...Show Details...
Description: SYGD contains the genome sequence of sake yeast strain, Kyokai no. 7 (K7). Users can search and browse the sequence and annotation information of the individual genes. It also p...Show Details...
Description: Pig Genome Database (PGD) is a central pig genome information hub to support the community activities. The key functions of PDG include pig gene pages (a centralized gene search...Show Details...
Database maintenance site: Simon Fraser University
Organism(s) covered:Burkholderia
Description: The Burkholderia Genome Database provides a resource for cystic fibrosis research community to perform multi-genome comparisons of strains within the Burkholderia cepacia comple...Show Details...
Database maintenance site: Kazusa DNA Research Institute
Organism(s) covered:Chrysanthemum morifolium
Description: Mum GARDEN is a database for cultivated chrysanthemum genomics. Each entry contains sequences (genome, CDS, PEP), BLAST results from NR and Araport11, and InterProScan data. Add...Show Details...
Database maintenance site: Kazusa DNA Research Institute
Organism(s) covered:Eucalyptus camaldulensis
Description: Eucalyptus camaldulensis Genome Database contains genetic information of E. camaldulensis which was investigated by sequencing the genome and the cDNA using a combination of the...Show Details...
Description: Zoysia Genome Database is a database for zoysiagrasses genomics. It contains sequencing and comparative analyses data about the genomes of zoysiagrasses; Z. japonica, Z. matrell...Show Details...
Database maintenance site: Kazusa DNA Research Institute
Organism(s) covered:Ipomoea batatas
Description: Sweetpotato GARDEN is a database for Sweetpotato (Ipomoea batatas) genomics. Each entry contains nucleotide sequence, BLAST search data from other databases such as TAIR and NR....Show Details...
Description: DBcherry is a database for cherry genomics. It contains information about Sweet cherry (Prunus avium), Satonishiki;1) whole genome sequences with gene annotation2) SNP, SSR, and...Show Details...
Database maintenance site: Kazusa DNA Research Institute
Organism(s) covered:Solanum melongena L.
Description: Eggplant Genome DataBase is a database about an eggplant (Solanum melongena L.)whole-genome dataset. Each entry contains nucleotide sequence, translated sequence, BLAST search d...Show Details...
Database maintenance site: MISTEA / LEPSE, INRA (French National Institute for Agricultural Research)
Organism(s) covered:Viridiplantae
Description: PHIS is an ontology-driven open source information system designed for plant phenomics. It allows assembling a number of datasets from different installations in controlled and ...Show Details...
Database maintenance site: National Institutes of Biomedical Innovation, Health and Nutrition
Organism(s) covered:
Description: DruMAP is a database about drug metabolism and pharmacokinetics (PK) analysis. It consists of compound report database, PK search and PK prediction sites. Each compound report i...Show Details...
Database maintenance site: University of Georgia, George Washington University
Organism(s) covered:All
Description: GlyGen is an integrated database for carbohydrate and glycoconjugate related data. It retrieves information from multiple international data sources and integrates and harmonize...Show Details...
Database maintenance site: Kazusa DNA Research Institute
Organism(s) covered:Viridiplantae
Description: Plant GARDEN is a portal site that curates genome and marker information of various plant species. It contains information about assembled genomes, markers (SSR, CAPS, SCAR), bi...Show Details...
Database maintenance site: JCVI (J. Craig Venter Institute), Texas Advanced Computing Center, The University of Texas at Austin, University of Cambridge
Organism(s) covered:Arabidopsis thaliana
Description: Araport is an open-access online community resource for Arabidopsis research. It hosts the Araport11, updated Arabidopsis genome annotation from TAIR10. Araport offers two core ...Show Details...
Database maintenance site: Tokyo Women's Medical University
Organism(s) covered:Caenorhabditis elegans
Description: NBRP C. elegans is a National Bioresource Project for the experimental animal "Nematode C. elegans". Tokyo Women's Medical University is the core facility to collect, store and ...Show Details...
Database maintenance site: Tohoku University Graduate School of Information Sciences
Organism(s) covered:
Description: NLDB is a database of automatically collected and predicted 3D protein-ligand interactions in the enzymatic reactions of metabolic pathways registered in KEGG. NLDB provides th...Show Details...
