Database maintenance site: Kyoto University Institute for Chemical Research Bioinformatics Center
Organism(s) covered:
Description: KEGG ENVIRON is a database of crude drugs, essential oils, and medicinal harbs, all of which are mostly natural products of plants. Each entry is associated with the chemical co...Show Details...
Description: The European Ribosomal RNA Database is a database of the RNA subunits critical to translation of RNA into proteins. The database currently contains only information on secondary...Show Details...
Description: COXPRESdb is a database of gene coexpression information. COXPRESdb features two major functions: a search capability for locating genes of interest and identifying coexpressed ...Show Details...
Database maintenance site: The National Research and Development Agency, Japan Fisheries Research and Education Agency (FRA)
Organism(s) covered:
Description: The database of AQUATIC ORGANISMS is for collating information on aquatic organisms. It contains information about species classification, biological details, scientific literat...Show Details...
Description: The WFCC is a international database for the collection, authentication, maintenance and distribution of cultures of microorganisms and cultured cells. It contains data on the o...Show Details...
Database maintenance site: Arizona State University
Organism(s) covered:Caenorhabditis elegans
Description: UTRome is a database of 3' UTRs in C. elegans. The database contains entries for all 3' UTRs in the genome. Users can search by gene and functional elements residing within 3' U...Show Details...
Description: This database provides information on the EST's of Triticeae, a subfamily of grasses to which the domesticated species of wheat, barley and rye belong. Annotations on the positi...Show Details...
Description: This database offers access to an annotated list of full-length coding DNA sequences of barley and wheat. It contains information on 8530 wheat sequences and 7341 barley sequenc...Show Details...
Description: This database consists of the mapped genome of the soil bacterium, Streptomyces griseus IFO 13350. This organism produces the aminoglycoside antibiotic Streptomycin, which has b...Show Details...
Description: SNPSTR is a database of STR elements with nearby SNPs. The database seeks to use coupled structural and variation data to capture genetic information about population history. ...Show Details...
Closed
RIKEN Arabidopsis cDNA Encyclopedia DNABook
Database maintenance site: RIKEN (The Institute of Physical and Chemical Research)
Database maintenance site: Kyushu Institute of Technology
Organism(s) covered:
Description: ProNuC is a database of interactions between proteins and nucleic acids, with 3D structural information on interaction between proteins and specific DNA motifs. It can be search...Show Details...
Database maintenance site: Kyushu Institute of Technology
Organism(s) covered:Homo sapiens
Description: This database offers information applicable to researchers who are studying and attempting to predict how gene expression affects the chances of survival and cure of a patient w...Show Details...
Description: PPDB is a database of plant promoter elements. This database contains position, motif, and sequence information for promoters from four major plant species. The promoters can be...Show Details...
Database maintenance site: NIH (National Institutes of Health)
Organism(s) covered:
Description: This is a database to visualize data provided in PDB format. Three-dimensional structures can be visualized using each type of viewer. Images can be automatically rotated to vie...Show Details...
Database maintenance site: Centre for DNA Fingerprinting and Diagnostics
Organism(s) covered:Archaea | Bacteria | Viruses
Description: MICAS is a tool that searches non-redundant microsatellites of a selected bacterial or archaeal genome sequence. It has been connected to the database, MICdb3.0, with accumulate...Show Details...
Database maintenance site: RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:Caenorhabditis elegans
Description: This is a database of monoclonal antibodies that specifically recognize cell types, tissues, or intracellular structures of C. elegans embryos. The monoclonal antibodies listed ...Show Details...
Description: Kinase Pathway Database is an integrated database of classification of protein kinases in the major eukaryotic species (human, mouse, rat, yeast, nematode, fruit fly) for which...Show Details...
Database maintenance site: Sandia National Laboratories
Organism(s) covered:Bacteria | Archaea
Description: Islander is a database of information on genomic islands-short sequences found to have integrated into the DNA of a cell by means of an integrase-obtained from sequenced bacteri...Show Details...
Description: InSatDb is a database of insect microsatellite sequence and characteristic information. The database contains categorized information regarding fundamental characteristics of mi...Show Details...
Inactive (Over 14 days)
IBRG: Image Bioinformatics Research Group
Database maintenance site: Fred Hutchinson Cancer Research Center
Description: The Glycoconjugate Data Bank provides information about functions and roles of glycans. The site has two main domains, Glyco-net, which provides functional and network interacti...Show Details...
Database maintenance site: RNA Research Group at Wuhan University/College of Life Sciences/Wuhan University
Organism(s) covered:
Description: GISSD is a database of group I type introns with thousands of intron sequences from a wide range of species, providing phylogeny and structural information on the introns. Intro...Show Details...
Database maintenance site: The University of Tokyo The Institute of Medical Science
Organism(s) covered:Dermatophagoides farinae
Description: This database is a searchable directory of full-length dust mite (Dermatophagoides farinae) cDNA sequences. BLAST searches against the full-length mite cDNA database are possibl...Show Details...
Closed
DNA database (DDBJ/EMBL/GenBank=INSD) overview and search
Database maintenance site: DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Organism(s) covered:
Description: DNA database (DDBJ/EMBL/GenBank=INSD) overview and search is a database of nucleotide sequences categorized by taxonomic groups, project types and countries of registration. Thi...Show Details...
Closed
Database for Protein-3000 Project
Database maintenance site: RIKEN (The Institute of Physical and Chemical Research)
Description: DART is a integrated database about genome sequence and microarrays of Arabidops. It provides following functions;1) analysis of gene expression by microarrays,2) search and ana...Show Details...
Database maintenance site: University of Tsukuba Shimoda Marine Research Center
Organism(s) covered:Ciona intestinalis
Description: CiPro is a database of Ciona intestinalis proteins. The database contains several experimental and bioinformatic tools for characterizing proteins and expression of their relate...Show Details...
Closed
CELLPEDIA
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:Homo sapiens
Description: CELLPEDIA is a repository database providing current information on human cells. Cell morphology, gene expression, etc. of various cells, as well as literature references are av...Show Details...
Closed
C. elegans RNAi Phenome Database
Database maintenance site: RIKEN (The Institute of Physical and Chemical Research) Kobe Institute
Database maintenance site: Japan Agency for Marine-Earth Science and Technology
Organism(s) covered:
Description: BISMaL is a integrated database for biodiversity information, particularly in biogeographic data of marine organisms. It mainly collects information of marine organisms around J...Show Details...
Database maintenance site: Kyushu Institute of Technology
Organism(s) covered:
Description: This is a database showing the interactions among base-amino acids when searched for atom pairs of bases and amino acids that are closely related in structure.Upon entry of sear...Show Details...
Description: ASAP II is a database of alternative splicing information coming from genomics and proteomics. It provides precise gene exon-intron structure, alternative splicing, tissue speci...Show Details...
Description: PINT is an anagram for Protein-protein INteractions Thermodynamic database.This database contains concentrated experimental information on the thermodynamics that occur when pro...Show Details...
Database maintenance site: Japan Society of Information and Knowledge
Organism(s) covered:
Description: This database contains information on Molecular Structure collected by the study of literature about Raman and Infrared Spectroscopy.A search option is available whereby informa...Show Details...
Database maintenance site: The University of Tokyo The Institute of Medical Science
Organism(s) covered:
Description: This database contains information on the protein kinases in the major eukaryotic species for which sequences have been determined. It includes data on classification of protein...Show Details...
Database maintenance site: NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:
Description: This is a catalog-format database containing information associated with projects in Japan: status, budget, summary, database site, download site, and links to press releases or...Show Details...
Database maintenance site: NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:
Description: Society Catalog is a collection of information on Japanese academic societies in life science and related fields developed by the National Bioscience Database Center (NBDC) at t...Show Details...
Database maintenance site: NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:
Description: Database catalog is a collection of information on life science-related databases. Records are mainly collected from databases constructed in Japan, and are maintained by the Na...Show Details...
Database maintenance site: Nara Institute of Science and Technology Graduate School of Biological Sciences
Organism(s) covered:Mus musculus
Description: NAISTrap is a database of clones listed in a table.Each clone is identified by its clone number (starting with 02e; 03e; 04e; 00v; 01v; 02v; 03v; 04v; 05v; 06v; 07v; 08v; 09v; 1...Show Details...
Database maintenance site: Kochi University Faculty of Science
Organism(s) covered:Ciona intestinalis
Description: This site provides information on certain target genes of Ciona intestinalis, and specifically the target gene for retinoic acid, an important metabolic substance in the growth ...Show Details...