Description: This is a proteomic database named jPOST to integrate proteome information including post-translational modifications and absolute protein abundance, acquired by multiple projec...Show Details...
Description: This database provides information on a set of full-length, high quality human clones ORF (Open Reading Frame = the protein-coding sequence of genes) in the Gateway cloning syst...Show Details...
Description: mitotRNAdb is a database of mitochondrial tRNA genes. It collects more than 30000 tRNA genes from metazoan mitochondrial RefSeq genomes. Users can search by DNA or RNA sequences...Show Details...
Description: HEMM is a database about microbial genomes and virtual metagenomes reconstructed from 16S rRNAs in microbial communities in every biosphere on a human body and various environme...Show Details...
Database maintenance site: SCADS (Screening Committee of Anticancer Drugs)
Organism(s) covered:Homo sapiens
Description: This site provides gene expression profiles and related analytical tools to evaluate potential of chemical compounds as anticancer agents. The anticancer drug gene expression da...Show Details...
Database maintenance site: RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Description: This is a search tool for compounds in RIKEN Natural products depository (RIKEN NPdepo). Each entry contains Compound name, CAS No., molecular weight, structure, InChI key, biol...Show Details...
Description: This site provides a comprehensive resource of microRNA target predictions and expression profiles. The target predictions of microRNAs are performed by a development of the miR...Show Details...
Database maintenance site: Center for iPS Cell Research and Application, Kyoto University
Organism(s) covered:Homo sapiens
Description: CiRA Research Activities is a portal site for introducing research activities of CiRA, Center for iPS Cell Research and Application of Kyoto University. It contains bioresource ...Show Details...
Description: geneSigDB is a database of fully traceable, standardized, annotated gene signatures which have been manually curated from published literatures. Data were collected from publish...Show Details...
Description: This database is a sexualized planarian expressed sequence tag database. It contains sequence, classification, clustering, and annotation data about ESTs and clusters. Moreover,...Show Details...
Database maintenance site: Yale University School of Medicine
Organism(s) covered:Homo sapiens
Description: HBT is a database of transcriptome data and associated metadata for the developing and adult human brain. It contains transcriptome data from experiments using the Affymetrix ge...Show Details...
Database maintenance site: ICGC (International Cancer Genome Consortium)
Organism(s) covered:Homo sapiens
Description: This is the ICGC, International Cancer Genome Consortium, Data Portal, which provides tools for visualizing, querying and downloading ICGC data released quarterly by the consort...Show Details...
Description: This database is a next-generation sequencing (NGS)-derived gene expression network (GEN) repository for a broad range of plant species. It contains transcript information (tran...Show Details...
Database maintenance site: Kazusa DNA Research Institute
Organism(s) covered:Solanum lycopersicum
Description: This is a database for 5’- and 3’-terminal sequences of clones those constitutes a BAC clone library for Solanum lycopersicum. In order to provide enriched annotation for the cl...Show Details...
Description: This is a Web based pictorial database for common underwater plants in Thailand. The international collaborative research group between Kasetsart University (KU), King Mongkut's...Show Details...
Database maintenance site: JIRCAS (Japan International Research Center for Agricultural Sciences)
Organism(s) covered:Bacteria | Fungi |
Description: Fermented foods in Thailand are classified by ingredients and described with pictures. Scientific names of organisms and microorganisms, which constitute the fermented foods, ar...Show Details...
Database maintenance site: National Institute of Genetics
Organism(s) covered:Marchantia polymorpha
Description: MarpolBase is a genome database for Marchantia polymorpha, which includes complete genome sequence (JGI Ver. 3.1). It consists of following tools and a database; 1) Genome brows...Show Details...
Database maintenance site: The University Museum, The University of Tokyo
Organism(s) covered:
Description: This database provides paleontology collections in the University Museum, the University of Tokyo. Each data contains photographs and references about specimen. This database a...Show Details...
Description: M-path DB is a database of metabolic pathways calculated sets of compounds from the PubChem and ChEBI databases. It contains putative metabolic pathways for a series of chemical...Show Details...
Description: ViBrism Database is a 3D-map database of endogenous gene expression in a virtual whole mouse brain. The data are produced by an original mapping framework Transcriptome Tomograp...Show Details...
Description: JBOL-DB is a database of voucher specimen combined with their sequences for DNA barcoding. It contains information about specimen with photographs and DNA sequences.Show Details...
Database maintenance site: Bioinformatics Laboratory of Meiji University
Organism(s) covered:Solanum lycopersicum
Description: TOMATOMICS is an integrated omics database of Solanum lycopersicum. It contains sequences of all Solanum lycopersicum ESTs, Micro-Tom full-length cDNAs, ITAG2.4 gene models, and...Show Details...
Description: PCoM is a database of protein complexes for photosynthetic organisms. This database stores the data obtained by LC-MS/MS analysis of the protein complexes after Blue-Native Page...Show Details...
Database maintenance site: Kyushu University Graduate School of Medical Sciences, DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Description: ChIP-Atlas is an integrative database for visualizing and exploiting public ChIP-seq data. This database covers almost all public ChIP-seq data submitted to the SRA (Sequence Re...Show Details...
Database maintenance site: National Institute of Public Health
Organism(s) covered:Homo sapiens
Description: The NIPH Clinical Trials Search is a portal site to cross-search the content of three national clinical research information registries in Japan: The University Hospital Medical...Show Details...
Database maintenance site: The institute of medical science, The University of Tokyo
Organism(s) covered:Homo sapiens
Description: OpenTein (Open Teratoma Investigation) is a database and repository for the digital images of stem cell-derived teratomas. It provides whole-slide images, which are searchable, ...Show Details...
Database maintenance site: Tohoku University museum
Organism(s) covered:Foraminifera
Description: E-Foram Stock is a database of planktonic foraminifera e-specimens (digital data), stored in the Tohoku university museum. It provides detailed information on real specimens cor...Show Details...
Description: CaPriCo is a database of specimens in the captive Primate collection at Japan Monkey Centre. It contains information of skeletal specimens, including photographs.Show Details...
Database maintenance site: JT Biohistory Research Hall
Organism(s) covered:Parasteatoda tepidariorum
Description: Pt_spiderBASE is a database for ESTs of the spider Parasteatoda tepidariorum, a model arthropod to study developmental biology, comparative embryology and evolutionary development.Show Details...
Description: MMMDB is a freely available database containing a collection of metabolites measured from multiple tissues from single mice. It provides not only quantified concentration but al...Show Details...
Database maintenance site: Tokyo Metropolitan Institute of Medical Science
Organism(s) covered:Callithrix jacchus
Description: This database is a collection of section images from the brain and spinal cord of the common marmoset at age 0. It additionally contains images from Petaurus breviceps, Macaca m...Show Details...
Description: This Plant gene Database contains plant gene information focusing on the secondary metabolism and the transport mechanism of plants. The data was obtained by analyzing EST infor...Show Details...
Database maintenance site: RIKEN BRC (RIKEN BioResource Research Center)
Organism(s) covered:Mus musculus
Description: SDOP-DB is a comparative standardised-protocol database for the integration and sharing of mouse phenotyping protocols. The protocols are described using SDOP data fomat which e...Show Details...
Database maintenance site: RIKEN BRC (RIKEN BioResource Research Center)
Organism(s) covered:Mus musculus
Description: Pheno-Pub provides information of mouse phenotyping analysis. It contains results of the mouse phenotyping analysis operated based on "Standard Operating Procedures; SOPs"by Jap...Show Details...
Database maintenance site: DBCLS(Database Center for Life Science)
Organism(s) covered:All
Description: This is a portal site that integrates life science databases in RDF format. The portal is a data portal developed and operated by DBCLS with the aim of comprehensively collectin...Show Details...
Database maintenance site: Tokai University School of Medicine
Organism(s) covered:Homo sapiens
Description: VaDE is a database of human genome polymorphisms involved in traits such as various disease susceptibilities or drug responses, collected from a number of academic papers. This ...Show Details...
Database maintenance site: Ehime University Center for Marine Environmental Studies
Organism(s) covered:Metazoa
Description: es-BANK is a collection of environmental specimens collected from all over the world and stored at Ehime University Center for Marine Environmental Studies. They are provided to...Show Details...
Description: MBGD SPARQL Search is a search tool for the Microbial Genome Database for Comparative Analysis (MBGD) in the form of Resource Description Framework (RDF) made available through ...Show Details...
Database maintenance site: Osaka University Institute for Protein Research
Organism(s) covered:
Description: PDB/RDF is a collection of PDB data in the Resource Description Framework (RDF) format. Users can search RDF entries by specifying PDB ID, properties (predicates) or keywords, a...Show Details...
Database maintenance site: NCBO (The National Center for Biomedical Ontology)
Organism(s) covered:Bacteria
Description: MCCV collects structured controlled vocabulary for describing meta information of microbial culture collection maintained in biological research centers.Show Details...
Description: GlyTouCan is an international repository of glycan structures. This database contains uncurated glycan structures ranging in resolution from monosaccharide composition to fully ...Show Details...
Database maintenance site: The Noguchi Institute, RIKEN (The Institute of Physical and Chemical Research), AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description: GlycoNMR is a database of NMR analysis of glycan. Each record contains information about structure, glycan type, chemical name, coupling constant, chemical shift, etc. It allows...Show Details...
Database maintenance site: Kyushu University, AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:Caenorhabditis elegans
Description: CGGDB is a database of glycogenes of C. elegans. It consists of gene list, Expression and Phenotype of RNAi line and provides additional information on the roles of glycoconjuga...Show Details...
Database maintenance site: Tohoku Medical Megabank Organization,Tohoku University
Organism(s) covered:Homo sapiens
Description: iJGVD is a database about genome variation in the Japanese population. This database provides data of genomic variations obtained by whole-genome sequencing of Japanese individu...Show Details...
Database maintenance site: JST (Japan Science and Technology Agency)
Organism(s) covered:
Description: NikkajiWeb is a search service of the "Japan Chemical Substance Dictionary (Nikkaji)", an organic compound dictionary database prepared by the Japan Science and Technology Agenc...Show Details...
