List of Database Records  (records : )

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Database maintenance site: United Centers for Advanced Research and Translational Medicine, Tohoku University Graduate School of Medicine
Organism(s) covered: Homo sapiens
Description: This site provides pdbBAM files those are binary sequence alignment/mapping (BAM) formatted file, in which proteins in Protein Data Bank (PDB) are represented in their positions... Show Details...
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Database maintenance site: International Institute of Molecular and Cell Biology in Warsaw
Organism(s) covered: Homo sapiens | Escherichia coli | Saccharomyces cerevisiae
Description: REPAIRtoire is a database for DNA damage and repair. The database contains the following types of information: 1) DNA damage linked to environmental mutagenic and cytotoxic agen... Show Details...
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Database maintenance site: Soka University Faculty of Science and Engineering
Organism(s) covered: Bacteria | Fungi | Homo sapiens | Mus musculus | Rattus norvegicus | ...
Description: MCAW-DB is a database whereby users can view the multiple alignment analysis results obtained from the Multiple Carbohydrate Alignment with Weights (MCAW) tool.The database prov... Show Details...
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Database maintenance site: Kyoto University Institute for Chemical Research Bioinformatics Center
Organism(s) covered: Viridiplantae
Description: PCIDB is a database to elucidate therapeutic effect of plants on human. It provides integrated data from KNApSAcK, ChEMBL, CTD, OMIM and KEGG DISEASE. Users can search data by K... Show Details...
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Database maintenance site: NBDC (Japan Science and Technology Agency Department of NBDC Program), DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Organism(s) covered: Homo sapiens
Description: TogoVar (NBDC's integrated database of Japanese genomic variation) is a database that has collected and organized genome sequence differences between individuals (variants) in t... Show Details...
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Database maintenance site: LPixel Inc.
Organism(s) covered:
Description: This is a collection of miscellaneous plugins for ImageJ that is an open source image processing program designed for scientific multidimensional images. Show Details...
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Database maintenance site: Soka University Faculty of Science and Engineering
Organism(s) covered:
Description: RINGS is a freely available Web resource for academic glycobiologists to analyze their data using the latest data mining and algorithmic techniques. It provides a number of tool... Show Details...
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Database maintenance site: Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered:
Description: WABI is a web API for using the search services of the DNA Data Bank of Japan (DDBJ) without needing to navigate the web front-end. WABI currently provides the following web API... Show Details...
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Database maintenance site: Computational Epigenomics Lab, Evolutionary Genomics and Bioinformatics Group, Dept. of Genetics, Inst. of Biotechnology, University of Granada
Organism(s) covered: Homo sapiens | Mus musculus | Arabidopsis thaliana | Pan troglodytes | Rhesus macaque | ...
Description: NGSmethDB is a database for whole genome methylomes generated from short-read data sets obtained by bisulfite sequencing (WGBS) technology. Publicly available short-read data se... Show Details...
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Database maintenance site: Bioinformatics Laboratory of Meiji University
Organism(s) covered: Arabidopsis thaliana | Oryza sativa
Description: PlantExpress is a platform for gene expression network (GEN) analysis with the public microarray data of rice and Arabidopsis. For a single-species GEN analysis, PlantExpress pr... Show Details...
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Database maintenance site: The University Museum, The University of Tokyo
Organism(s) covered: Aceraceae | Adoxaceae | Annonaceae | Aquifoliaceae | Araceae | ...
Description: This is a database of type specimens of species and infraspecific taxa of the plant families preserved in the Herbarium, Department of Botany, the University Museum, the Univers... Show Details...
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Database maintenance site: Max Planck Institute for Informatics
Organism(s) covered: Homo sapiens
Description: DeepBlue provides a programmatic interface for finding, selecting, filtering, summarizing and downloading epigenomic data from the main epigenome mapping projects: ENCODE, NIH R... Show Details...
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Database maintenance site: RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered: Oryzias
Description: This database provides metadata of the NBRP medaka database ( https://integbio.jp/dbcatalog/en/record/nbdc00147 ). Data on this site are available as downloadable RDF files and ... Show Details...
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Database maintenance site: DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Organism(s) covered:
Description: PURL is a server for Persistent Uniform Resource Locators (URLs). On this site, users allows to create and register a persistent URL which is an address on the World Wide Web th... Show Details...
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Database maintenance site: MMRC (Medical Mycology Research Center MMRC, Chiba University)
Organism(s) covered: Fungi | Actinobacteria | Amoeba | Babesia | Blastocystis | ...
Description: National Bioresource Project - 'Pathogenic eukaryotic microorganisms' collects reliable strains of pathogenic microorganisms (fungi, actinomycetes and protozoa) to support educa... Show Details...
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Database maintenance site: GCMR (Center for Conservation of Microbial Genetic Resource, Organization for Research and Community Development, Gifu University)
Organism(s) covered: Bacteria
Description: National Bioresource Project - 'Pathogenic bacteria' collects reliable strains of pathogenic bacteria to support education and research in infectious diseases. Users can search ... Show Details...
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Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered: Arabidopsis thaliana | Dianthus caryophyllus | Cyclamen persicum | Chrysanthemum morifolium | Eustoma exaltatum subsp. Russellianum | ...
Description: This database provides information of phenotype in transgenic plants created by CRES-T (Chimeric REpressor gene-Silencing Technology) system which is a novel gene silencing tech... Show Details...
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Database maintenance site: Nara Institute of Science and Technology
Organism(s) covered:
Description: CobWeb is a database of alkaloid pathways. Users can browse pathways from the pathway map ID list. Pathway map ID(s) or object(s) in each map is/are highlighted when user input ... Show Details...
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Database maintenance site: JCVI (J. Craig Venter Institute)
Organism(s) covered: Medicago truncatula
Description: This is the genome database for Medicago truncatula, a model legume. It currently hosts the latest version of the genome assembly and annotation. It provides keyword- and locus ... Show Details...
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Database maintenance site: Nara Institute of Science and Technology
Organism(s) covered:
Description: "Twins" retrieves similar metabolites in chemical structure when user input KNApSAcK CID and Similarity (%). Resulting CID links to KNApSAcK Core database and KNApSAcK Metabolit... Show Details...
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Database maintenance site: National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
Organism(s) covered: Oryza sativa
Description: RiceVarMap v2.0 is a comprehensive database for rice genomic variation and its functional annotation. It provides curated information of 17,397,026 genomic variations (including... Show Details...
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Database maintenance site: Structural Bioinformatics Group, National University of Quilmes
Organism(s) covered: Bacteria | Eukaryota | Archaea | Avsunviroidae | Pospiviroidae | ...
Description: CoDNaS is a database of redundant crystallographic structures for a given protein extensively linked with structural, biological and physicochemical information. For each protei... Show Details...
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Database maintenance site: Barts Cancer Institute
Organism(s) covered: Homo sapiens | Mus musculus
Description: PED is a repository for pancreatic-derived -omics data. The database provides the research community with an open access tool to mine currently available pancreatic cancer exper... Show Details...
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Database maintenance site: IRRI (International Rice Research Institute)
Organism(s) covered: Oryza sativa
Description: Rice SNP-Seek Database provides Genotype, Phenotype, and Variety Information for rice (Oryza sativa L.). The main functionalities are query for SNPs and Indels from the 3000 Gen... Show Details...
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Database maintenance site: Japan Council for Quality Health Care
Organism(s) covered: Homo sapiens
Description: This service provides information to medical professionals and patients on relevant treatment therapy options that are sufficiently supported by scientific evidence so the best ... Show Details...
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Database maintenance site: NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:
Description: This is a collection of user dictionaries of Japanese technical terms in scientific field, which can be used for a morphological analysis engine, MeCab. It consists of the JST... Show Details...
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Database maintenance site: Kyoto University Institute for Chemical Research Bioinformatics Center
Organism(s) covered: Homo sapiens
Description: KEGG NETWORK accumulates variations of molecular interaction/reaction networks in Homo sapiens distinguishing gene variants and other perturbants. Each entry is called "network ... Show Details...
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Database maintenance site: National Center for Global Health and Medicine
Organism(s) covered: Homo sapiens
Description: Medical Genomics Japan Variant Database (MGeND) provides the integrated information of genomic variations and clinical characteristics of Japanese. Gene and clinical information... Show Details...
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Database maintenance site: RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered:
Description: Computational metabolomics is a collection about computational tools for metabolomics. It contains MS-DIAL, MS-FINDER, MRMPROBS, MRM-DIFF, SmetSearch, Cuated EI-MS and MS/MS dat... Show Details...
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Database maintenance site: Harvard Medical School, Stanley Center for Psychiatric Research at Broad Institute
Organism(s) covered: Mus musculus
Description: DropViz provides the Drop-seq data of single-cell RNA sequencing of 690,000 cells sampled from nine regions of the adult mouse brain. Users can visualize and re-analyze these ge... Show Details...
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Database maintenance site: DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Organism(s) covered: Homo sapiens
Description: PubCaseFinder is a database of human disease-phenotype associations which employs a text mining-based approach to improve the coverage of Orphanet. It contains more than one mil... Show Details...
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RIKEN HIFI:  RIKEN Heteroatom-containing Ion Finder
Database maintenance site: RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered: Allium cepa | Allium sativum | Allium fistulosum
Description: RIKEN HIFI is a tool for Liquid Chromatography-Fourier transfer ion cyclotron resonance-mass spectrometry ( LC-FTICR-MS). This tool provides three features: (i) Element Search f... Show Details...
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Database maintenance site: RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered: Viridiplantae
Description: ReSpect is a web-based database of MS/MS data pertaining to phytochemicals. It collects MSn spectra data from literature reports and authentic standards. It allows to using a fr... Show Details...
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MeKO
Database maintenance site: RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered: Arabidopsis thaliana
Description: MeKO is a database of metabolomic data for Arabidopsis thaliana. It contains profiling data of metabolites in 50 Arabidopsis mutants, using gas chromatography/mass spectrometry ... Show Details...
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Database maintenance site: Computational Biology Institute
Organism(s) covered: Arabidopsis thaliana | Oryza barthii | Oryza brachyantha | Oryza glaberrima | Oryza meridionalis | ...
Description: AgroLD is a RDF knowledge base that consists of data integrated from a variety of plant resources and ontologies. It provides a portal for bioinformatics and domain experts to e... Show Details...
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Database maintenance site: RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered: Hevea brasiliensis
Description: Rubber Genome & Transcriptome Database provides rubber tree genome sequence and multi-transcriptomics data. This database provides genome information including gene functional a... Show Details...
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Database maintenance site: NITE (National Institute of Technology and Evaluation)
Organism(s) covered: Bacteria
Description: MiFuP Safety is a free web application that can assess whether a given microbe has any hazardous property based on its genome information. The system automatically identifies ge... Show Details...
Database maintenance site: NITE (National Institute of Technology and Evaluation)
Organism(s) covered:
Description: The ASEAN-Japan Chemical Safety Database (AJCSD) is a database co-developed by ASEAN countries and Japan based on an agreement reached at ASEAN Economic Ministers and METI Econo... Show Details...
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Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description: Oligonucleic Acid Drug Database is focused on nucleic acid drugs known as biopharmaceuticals and displayed approval drugs and information on three phases of clinical trial stage... Show Details...
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Database maintenance site: University of Tsukuba Graduate School of Life and Environmental Sciences
Organism(s) covered: Cucumis melo
Description: Melonet DB is a database about whole gene expression in muskmelon (Cucumis melo L.). It contains expression patterns of whole gene in 30 different tissues of "Earl's favorite Ha... Show Details...
Database maintenance site: Karydo TherapeutiX, Inc.
Organism(s) covered: Mus musculus
Description: This database provides gene expression data after a drug administration and their analysis results using mouse. It offers comprehensive datasets representing drug-induced gene e... Show Details...
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Oncomine
Database maintenance site: Thermo Fisher Scientific Inc.
Organism(s) covered: Homo sapiens
Description: Oncomine™ is a database for cancer microarray and a web application to integrate profiling-data of cancer genes in various types of cancers. They provide two types of platforms,... Show Details...
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Database maintenance site: Osaka University Institute for Protein Research
Organism(s) covered:
Description: The BMRBj Data Server provides NMR-STAR data in BMRB (http://integbio.jp/dbcatalog/record/nbdc00380 ) in various formats. Users can select data format from XML, RDF, and JSON. Show Details...
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Database maintenance site: BioModels.net Team, EMBL-EBI
Organism(s) covered:
Description: BioModels Database is a repository of mathematical models relate to biological and biomedical field. It covers a wide range of processes, such as metabolic pathways, protein-dru... Show Details...
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Database maintenance site: Department of Computer Science and Engineering, Yuan Ze University
Organism(s) covered: Homo sapiens | Mus musculus | Rattus norvegicus
Description: RegPhos is a database for kinases and their substrates. It provides the information that basic description for proteins, gene expression data in each type of cancers, gene name ... Show Details...
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Database maintenance site: Shanghai Jiao Tong University
Organism(s) covered: Bacteria | Archaea
Description: TADB is a database for Type 2 Toxin-antitoxin (TA) loci in Bacteria and Archaea. Sequence information of nucleic acids and amino acids, loci in the genome, and information of th... Show Details...
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Database maintenance site: Forestry and Forest Products Research Institute
Organism(s) covered: Cerambycidae | Disteniinae
Description: This database is a collection about images based on specimens of Japanese longicorn beetles deposited at FFPRI, Forestry and Forest Products Research Institute. It contains imag... Show Details...
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Database maintenance site: Charité - Universitätsmedizin Berlin
Organism(s) covered: Homo sapiens
Description: SuperSweet is a database for existing natural and artificial sweeteners, and also includes a homology modelled sweet taste receptor and docked binders. A graphical user-interfac... Show Details...
Database maintenance site: RostLab, Technische Universität München
Organism(s) covered: Homo sapiens | Arabidopsis Thaliana
Description: LocDB is a database that collects experimental annotations for the subcellular localization of proteins in Human (Homo sapiens) and Weed (Arabidopsis thaliana). In addition to t... Show Details...
Database maintenance site: Birkbeck College, University of London, Queen Mary University of London
Organism(s) covered:
Description: PCDDB is a public repository that archives circular dichroism (CD) and synchrotron radiation CD (SRCD) spectral data of proteins. It also provides associated experimental metada... Show Details...