Description: The chicken Variation Database (ChickVD) is an integrated information system for storage, retrieval, visualization and analysis of chicken variation data.Show Details...
Organism(s) covered:Oryza sativa L. Yssp. Indica | Oryza sativa L. ssp. japonica
Description: In BGI-RIS, sequence contigs of Beijing indica and Syngenta japonica have been further assembled and anchored onto the rice chromosomes. The database has annotated the rice geno...Show Details...
Database maintenance site: NIBSC (National Institute for Biological Standards and Control)
Organism(s) covered:Homo sapiens
Description: The UK Stem Cell Bank (UKSCB) hosted at the National Institute for Biological Standards and Control (NIBSC) is committed to working closely with the clinical and research commun...Show Details...
Description: PHI-Base contains expertly curated molecular and biological information on genes proven to affect the outcome of pathogen-host interactions. PHI-base catalogues experimentally v...Show Details...
Description: Drosophila Polymorphism Database, is a secondary database designed to provide a collection of all the existing polymorphic sequences in the Drosophila genus. It allows, for the ...Show Details...
Database maintenance site: ATCC Standards Development Organisation
Organism(s) covered:All
Description: ATCC authenticates microorganisms and cell lines and manages logistics of long-term preservation and distribution of cultures for the scientific community. ATCC supports the cul...Show Details...
Database maintenance site: Arizona State University
Organism(s) covered:Eukaryota
Description: The Telomerase Database is a Web-based tool for the study of structure, function, and evolution of the telomerase ribonucleoprotein. The objective of this database is to serve t...Show Details...
Description: DNASU is a central repository for plasmid clones and collections. Currently we store and distribute over 197,000 plasmids including 75,000 human and mouse plasmids, full genome ...Show Details...
Database maintenance site: California Academy of Sciences
Organism(s) covered:Formicidae
Description: AntWeb is a website documenting the known species of ants, with records for each species linked to their geographical distribution, life history, and includes pictures.Show Details...
Database maintenance site: American Chemical Society
Organism(s) covered:All
Description: CAS (Chemical Abstracts Service) is a division of the American Chemical Society and contains databases of chemical information. CAS Registry Numbers (often referred to as CAS RN...Show Details...
Database maintenance site: AGRIS Administrators, Ohio State University
Organism(s) covered:Arabidopsis thaliana
Description: The Arabidopsis Gene Regulatory Information Server (AGRIS) is a new information resource of Arabidopsis promoter sequences, transcription factors and their target genes. AGRIS c...Show Details...
Database maintenance site: AFTOL Team, Oregon State University
Organism(s) covered:Fungi
Description: The Assembling the Fungal Tree of Life (AFTOL) project is dedicated to significantly enhancing our understanding of the evolution of the Kingdom Fungi, which represents one of t...Show Details...
Description: The Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to the International Arabidopsis Genome Programme and the wider research community.Show Details...
Database maintenance site: Advance Biomedical Computing Center, NCI (National Cancer Institute, National Institutes of Health)
Organism(s) covered:All
Description: Within this database you will to able to find more than 12,000 extracted three-dimensional junction and kissing loop structures as well as detailed annotations for each.Show Details...
Database maintenance site: Laboratory of Bioinformatics, Faculty of Biology, Adam Mickiewicz University
Organism(s) covered:All
Description: miRNEST is an integrative collection of animal, plant and virus microRNA data. miRNEST is being gradually developed to create an integrative resource of miRNA-associated data. T...Show Details...
Description: Implemented the SNP discovery software autoSNP within a relational database to enable the efficient mining of the identified polymorphisms and the detailed interrogation of the ...Show Details...
Database maintenance site: EuroCarbDB, Justus-Liebig University Giessen, Justus-Liebig University Giessen
Organism(s) covered:All
Description: Database on carbohydrate building blocks / residues (monosaccharides). Provides various kinds of residue data, especially notation information.Show Details...
Description: CellFinder maps validated gene and protein expression, phenotype and images related to cell types.The data allow characterization and comparison of cell types and can be browsed...Show Details...
Database maintenance site: Max Planck Institute of Molecular Plant Physiology (MPIMP)
Organism(s) covered:Viridiplantae
Description: The Golm Metabolome Database (GMD) provides gas chromatography (GC) mass spectrometry (MS) reference spectra, reference metabolite profiles and tools for one of the most widesp...Show Details...
Description: FlowRepository is a database of flow cytometry experiments where you can query and download data collected and annotated according to the MIFlowCyt standard. Data are generally ...Show Details...
Description: The Influenza Research Database (IRD) is a free, open, publicly-accessible resource funded by the U.S. National Institute of Allergy and Infectious Diseases through the Bioinfor...Show Details...
Database maintenance site: NIF (Neuroscience Information Framework)
Organism(s) covered:All
Description: The Antibody Registry exists to give researchers a way to universally identify antibodies used in publications. The registry lists many commercial antibodies from about 200 vend...Show Details...
Database maintenance site: Centre for Structural and Functional Genomics, Concordia University
Organism(s) covered:Fungi
Description: mycoCLAP is a searchable resource for the knowledge and annotation of Characterized Lignocellulose-Active Proteins of fungal origin.Show Details...
Database maintenance site: ASCB (American Society for Cell Biology)
Organism(s) covered:All
Description: This library is a public and easily accessible resource database of images, videos, and animations of cells, capturing a wide diversity of organisms, cell types, and cellular pr...Show Details...
Database maintenance site: Bioinformatics Centre, University of Copenhagen, BRIC (Biotech Research and Innovation Centre, University of Copenhagen), Danish State Hospital, Finsen Laboratory
Organism(s) covered:Homo sapiens | Mus musculus
Description: BloodSpot is a database of mRNA expression in healthy and malignant haematopoiesis and includes data from both humans and mice. The core function of BloodSpot is to provide an e...Show Details...
Description: PRGdb is an open and daily updated space about plant resistance genes, in which all information about this family is stored, curated and discussed. This resource encourages rese...Show Details...
Database maintenance site: CERM, University of Florence, Florence
Organism(s) covered:All
Description: MetalPDB is a resource aimed at conveying the information available on the three-dimensional structures of metal-binding biological macromolecules in a consistent and effective ...Show Details...
Database maintenance site: Institute of Systems Biology Ltd, KAUST (King Abdullah University of Science and Technology), Vavilov Institute of General Genetics, Russian Academy of Sciences
Organism(s) covered:Homo sapiens | Mus musculus
Description: HOmo sapiens COmprehensive MOdel COllection (HOCOMOCO) v10 provides transcription factor (TF) binding models for 601 human and 396 mouse TFs.In addition to basic mononucleotide ...Show Details...
Database maintenance site: Center for Medical Genetics, Keio University School of Medicine
Organism(s) covered:Homo sapiens
Description: DPV provides information on germline pathogenic mutations in the Japanese population. The data of mutations were curated from published papers regarding Japanese patients with r...Show Details...
Description: The MUTANTS is a database of compounds (including natural substances) which have been tested for their mutagenicity (genotoxicity) by the systems of different genetic end-points...Show Details...
Description: The RADDAR-J site was constructed for consolidating and supporting registry studies about intractable diseases covered by the Practical Research Project for Rare/Intractable Dis...Show Details...
Description: The Neotoma Paleoecology Database is a community-curated data repository for paleoecological data spanning the last 5 million years. Data currently include fossil pollen, mammal...Show Details...
Database maintenance site: National Museum of Nature and Science
Organism(s) covered:Tracheophyta
Description: "Global Red List of Japanese Threatened Plants" provides information of threatened vascular plants from national or regional red lists of China, Japan, South Korea, East Russia ...Show Details...
Database maintenance site: National Institute of Genetics, TEC group
Organism(s) covered:Escherichia coli
Description: TEC database provides the regulatory targets for all sigma factors and transcription factor (TF)s in E. coli identified by genomic SELEX screening. Users can search either TFs t...Show Details...
Database maintenance site: The University of Tokyo, Forestry and Forest Products Research Institute, Hokkaido Research Organization, Meiji University
Organism(s) covered:Abies sachalinensis
Description: TodoFirGene is a transcriptome database for Abies sachalinensis. It provides gene expression data in the female flower, male flower, young leaf and inner bark, and gene annotati...Show Details...
Database maintenance site: Department of Biomolecular Science, Faculty of Science, Toho University
Organism(s) covered:Homo sapiens
Description: This database provides the constitutive androstane receptor (CAR) binding sites in the human genome identified by a modified yeast one-hybrid system, and the experimentally vali...Show Details...
Database maintenance site: Department of Biomolecular Science, Faculty of Science, Toho University
Organism(s) covered:Homo sapiens
Description: This database provides the retinoid X receptor (RXR) binding sites in the human genome identified by a modified yeast one-hybrid system, and the experimentally validated regulat...Show Details...
Description: Virus-Host DB is a database about the relationships between viruses and their hosts. It provides information of the relationships represented in the form of pairs of NCBI taxono...Show Details...
Description: AlliumTDB is a database for transcriptomic data by RNA-Seq about Allium sp. Each entry contains sequence data, expression profile, BLAST annotations using TAIR, IRGSP or NCBI, a...Show Details...
Description: ALCOdb is a gene coexpression database for microalgae. It provides gene coexpression data about two unicellular microalgae: a green alga Chlamydomonas reinhardtii and a red alga...Show Details...
Database maintenance site: Nagahama Institute of Bio-Science and Technology
Organism(s) covered:Homo sapiens
Description: Mutation@A Glance is an integrated database for genetic variations including disease-causing mutations, cancer-related mutations and natural variants in human genes. It includes...Show Details...
Description: FiMSeA is a database about fishes of the mainland Southeast Asia. It contains information of fish specimens (Taxon, DNA information, Specimen preserved institute, Sampling locat...Show Details...
Database maintenance site: Kazusa DNA Research Institute
Organism(s) covered:Fagopyrum esculentum
Description: BGDB is a genome database for Buckwheat. It provides a draft assembly sequence of the genome using short reads obtained by NGS, and information of predicted genes with annotatio...Show Details...
Database maintenance site: Medical Mycology Research Center, Chiba University
Organism(s) covered:Fungi | Actinobacteria
Description: This is a catalog about strains of pathogenic fungi and actinomycetes isolated or stocked at the Medical Mycology Research Center, Chiba University. Each entry contains scientif...Show Details...
Description: RECOG is a workbench software program using the MBGD (Microbial Genome Database for Comparative Analysis) data, which is used to conduct comparative genome analyses on a massive...Show Details...
Database maintenance site: RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered:Arabidopsis thaliana
Description: AtMetExpress LC-MS is a phytochemical atlas of Arabidopsis thaliana. Here, following two datasets are available; a dataset for phytochemical accumulation of many developmental s...Show Details...
Description: This site is a portal site of data resources provided by the JT Biohistory Research Hall. It contains following databases: Pt_spiderBASE (a collection of nucleotide sequences fr...Show Details...
