Description: GpDB is a publicly accessible, relational database of G-proteins and their interactions with GPCRs and effector molecules. The sequences are classified according to a hierarchy ...Show Details...
Database maintenance site: Wishart Lab, University of Alberta
Organism(s) covered:All
Description: Toxin and Toxin Target Database (T3DB) is a bioinformatics resource that combines detailed toxin data with comprehensive toxin target information.Show Details...
Database maintenance site: University College London
Organism(s) covered:All
Description: The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and ...Show Details...
Description: OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes. Orthology refers to the last common ancestor of the species under consideration, and thus OrthoDB expl...Show Details...
Description: Domain mapping of disease mutations (DMDM) is a database in which each disease mutation can be displayed by its gene, protein or domain location.Show Details...
Description: The Enzyme Database was developed as a new way to access the data of the IUBMB Enzyme Nomenclature List. The data, which are stored in a MySQL database, preserve the formatting ...Show Details...
Database maintenance site: Naturalis Biodiversity Center
Organism(s) covered:All
Description: TreeBASE is a repository of phylogenetic information, specifically user-submitted phylogenetic trees and the data used to generate them. TreeBASE accepts all types of phylogenet...Show Details...
Database maintenance site: Toronto Hospital for Sick Children
Organism(s) covered:All
Description: iRefWeb is an interface to a relational database containing the latest build of the interaction Reference Index (iRefIndex) which integrates protein interaction data from ten di...Show Details...
Description: Aspergillus Genomes is a resource for viewing annotated genes arising from various Aspergillus sequencing and annotation projects.Show Details...
Description: CEBS (Chemical Effects in Biological Systems) is an integrated public repository for toxicogenomics data, including the study design and timeline, clinical chemistry and histopa...Show Details...
Database maintenance site: University of California Los Angeles, University of Missouri, University of North Carolina, The Jackson Laboratory
Organism(s) covered:Mus musculus
Description: The MMRRC distributes and cryopreserves scientifically valuable, genetically engineered mouse strains and mouse ES cell lines with potential value for the genetics and biomedica...Show Details...
Description: JAX Mice are the industry standard for animal model research, using precise genome solutions to better understand human disease. Our rigorous Animal Health Programs and stringen...Show Details...
Database maintenance site: Frederick National Laboratory for Cancer Research, University of Arkansas for Medical Sciences
Organism(s) covered:Homo sapiens
Description: The Cancer Imaging Archive (TCIA) is a large archive of medical images of cancer accessible for public download. All images are stored in DICOM file format. The images are organ...Show Details...
Database maintenance site: SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:All
Description: The SWISS-MODEL Repository is a database of annotated 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for protein sequences of selected mode...Show Details...
Database maintenance site: SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:All
Description: HAMAP is a system, based on manual protein annotation, that identifies and semi-automatically annotates proteins that are part of well-conserved families or subfamilies: the HAM...Show Details...
Database maintenance site: Thomas lab, University of Southern California
Organism(s) covered:All
Description: The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a unique resource that classifies genes by their functions, using published scientific...Show Details...
Description: HumanCyc is a bioinformatics database that describes human metabolic pathways and the human genome. By presenting metabolic pathways as an organizing framework for the human gen...Show Details...
Description: InnateDB has been developed to facilitate systems level investigations of the mammalian (human, mouse and bovine) innate immune response. Its goal is to provide a manually-curat...Show Details...
Description: Peroxibase provides access to peroxidase sequences from all kingdoms of life, and provides a series of bioinformatics tools and facilities suitable for analysing these sequences.Show Details...
Database maintenance site: Structural Bioinformatics and Network Biology Group
Organism(s) covered:All
Description: The database of 3D Interaction Domains (3did) is a collection of domain-domain interactions in proteins for which high-resolution three-dimensional structures are known. 3did ex...Show Details...
Database maintenance site: Wellcome Sanger Institute
Organism(s) covered:Vertebrata
Description: The Vertebrate Genome Annotation (VEGA) database is a central repository for high quality manual annotation of vertebrate finished genome sequence.Show Details...
Description: TargetTrack, a target registration database, provides information on the experimental progress and status of targets selected for structure determination.Show Details...
Description: The Protein Data Bank archives information about the 3D shapes of proteins, nucleic acids, and complex assemblies that helps students and researchers understand all aspects of b...Show Details...
Database maintenance site: Rutgers, The State University of New Jersey
Organism(s) covered:All
Description: Ligand Expo is a data resource for finding information about small molecules bound to proteins and nucleic acids. Tools are provided to search the PDB dictionary for chemical co...Show Details...
Database maintenance site: Royal Society of Chemistry
Organism(s) covered:
Description: ChemSpider is a freely available collection of compound data from across the web, which aggregates chemical structures and their associated information into a single searchable ...Show Details...
Database maintenance site: VSNU (Association of Universities in the Netherlands), DANS(Data Archiving and Networked Services)
Organism(s) covered:
Description: NARCIS provides access to scientific information, including (open access) publications from the repositories of all the Dutch universities, KNAW, NWO and a number of research in...Show Details...
Description: DPVweb provides a central source of information about viruses, viroids and satellites of plants, fungi and protozoa. Comprehensive taxonomic information, including brief descrip...Show Details...
Database maintenance site: PRABI, Rhone-Alpes Bioinformatics Center
Organism(s) covered:All
Description: In English, PRIAM stands for enzyme-specific profiles for metabolic pathway prediction. PRIAM is a method for automated enzyme detection in a fully sequenced genome, based on al...Show Details...
Database maintenance site: Georgetown University Medical Center, PIR, University of Delaware, EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered:All
Description: The PIR SuperFamily concept is being used as a guiding principle to provide comprehensive and non-overlapping clustering of UniProtKB sequences into a hierarchical order to refl...Show Details...
Description: HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved us...Show Details...
Database maintenance site: Princeton University, Samuel Lunenfeld Research Institute, Mount Sinai Hospital, University of Edinburgh, University of Montreal
Description: BioGRID is an interaction repository with data compiled through comprehensive curation efforts. BioGRID currently holds over 980,000 interactions curated from both high-throughp...Show Details...
Database maintenance site: NINDS (National Institute of Neurological Disorders & Stroke)
Organism(s) covered:Homo sapiens
Description: The NINDS Parkinson's Disease (PD) Biomarkers Program Data Management Resource enables web-based data entry for clinical studies supporting PD biomarker development, as well as ...Show Details...
Database maintenance site: CDC (Centers for Disease Control and Prevention), NINDS (National Institute of Neurological Disorders & Stroke)
Organism(s) covered:Homo sapiens
Description: The Federal Interagency Traumatic Brain Injury Research (FITBIR) informatics system is an extensible, scalable informatics platform for TBI relevant imaging, assessment, genomic...Show Details...
Database maintenance site: NIMH (National Institute of Mental Health)
Organism(s) covered:Homo sapiens
Description: National Database for Autism Research (NDAR) is an extensible, scalable informatics platform for austism spectrum disorder-relevant data at all levels of biological and behavior...Show Details...
Database maintenance site: Churchill Group, The Jackson Laboratory
Organism(s) covered:Mus musculus
Description: This site provides access to raw data from various QTL (quantitative trait loci) studies using rodent inbred line crosses. Data are available in the .csv format used by R/qtl an...Show Details...
Database maintenance site: UCSD (University of California San Diego)
Organism(s) covered:All
Description: The database details a comprehensive IUBMB approved classification system for membrane transport proteins known as the Transporter Classification (TC) system. The TC system is a...Show Details...
Description: The PhysioNet Resource is intended to stimulate current research and new investigations in the study of complex biomedical and physiologic signals. It offers free web access to ...Show Details...
Description: NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web.Show Details...
Database maintenance site: RUCDR Infinite Biologics, Washington University in St Louis School of Medicine
Organism(s) covered:Homo sapiens
Description: This resource stores and distributes clinical data and biomaterials (DNA samples and cell lines) available in the NIDA Genetics Initiative. This includes blood and other biospec...Show Details...
Description: The NIDA Data Share web site is an electronic environment that allows data from completed clinical trials to be distributed to investigators and the public in order to promote n...Show Details...
Database maintenance site: ICPSR (Inter-university Consortium for Political and Social Research)
Organism(s) covered:Homo sapiens | Human immunodeficiency virus
Description: NAHDAP acquires, preserves and disseminates data relevant to drug addiction and HIV research. The scope of the data housed at NAHDAP covers a wide range of legal and illicit dru...Show Details...
Description: BEI Resources provides reagents, tools and information for studying Category A, B, and C priority pathogens, emerging infectious disease agents, non-pathogenic microbes and othe...Show Details...
Database maintenance site: The UT Center for Integrative and Translational Genomics, NIMH (National Institute of Mental Health)
Organism(s) covered:Arabidopsis thaliana | Drosophila melanogaster | Glycine max | Homo sapiens | Hordeum vulgare L. | ...
Description: GeneNetwork is a group of linked data sets and tools used to study complex networks of genes, molecules, and higher order gene function and phenotypes. GeneNetwork combines more...Show Details...
Organism(s) covered:Canis | Homo sapiens | Mus musculus
Description: The CardioVascular Research Grid (CVRG) project is creating an infrastructure for sharing cardiovascular data and data analysis tools. CVRG tools are developed using the Softwar...Show Details...
Description: The goal of BioLINCC is to facilitate and coordinate the existing activities of the NHLBI Biorepository and the Data Repository and to expand their scope and usability to the sc...Show Details...
Description: The database provides a means of investigating alternative splicing and can be used for identifying alternative splicing - related motifs, such as the exonic splicing enhancer (...Show Details...
Database maintenance site: NCKU (National Cheng Kung University) Bioinformatics Center
Organism(s) covered:Homo sapiens
Description: The tumor-associated gene (TAG) database was designed to utilize information from well-characterized oncogenes and tumor suppressor genes to facilitate cancer research. All targ...Show Details...
Database maintenance site: National University of Singapore
Organism(s) covered:Homo sapiens
Description: A database for facilitating the search for drug adverse reaction target. DART contains information about known drug adverse reaction targets, functions and properties.Show Details...
Description: This website provides genome sequence from the Nipponbare subspecies of rice and annotation of the 12 rice chromosomes. These data are available through search pages and the Gen...Show Details...
