Description: FunCoup is a framework to infer genome-wide functional couplings in 11 model organisms. Functional coupling, or functional association, is an unspecific form of association that...Show Details...
Database maintenance site: Howard Hughes Medical Institute, Harvard Medical School
Organism(s) covered:Drosophila melanogaster
Description: DRSC Functional Genomics Resources (DRSC-FGR) began as the Drosophila RNAi Screening Center (DRSC), founded by Prof. Norbert Perrimon in 2003, and the Transgenic RNAi Project (T...Show Details...
Database maintenance site: Mayo Clinic, Scottsdale, MIT (Massachusetts Institute of Technology)
Organism(s) covered:All
Description: Thermodynamics calculator for biochemical reactions. eQuilibrator is a simple web interface designed to enable easy thermodynamic analysis of biochemical systems. eQuilibrator e...Show Details...
Database maintenance site: Genomics Institute, University of California
Organism(s) covered:Homo sapiens | Mus musculus
Description: Encyclopedia of DNA Elements (ENCODE) has created a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA level...Show Details...
Description: This computational biology resource mainly focuses on annotation and detection of eukaryotic linear motifs (ELMs) by providing both a repository of annotated motif data and an e...Show Details...
Description: eggNOG (evolutionary genealogy of genes: Non-supervised Orthologous Groups) is a database of orthologous groups of genes. The orthologous groups are annotated with functional de...Show Details...
Description: EcoliWiki is a community-based resource for the annotation of all non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements.Show Details...
Database maintenance site: Disease Systems Biology Group, Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
Organism(s) covered:Homo sapiens
Description: The DistiLD database aims to increase the usage of existing genome-wide association studies (GWAS) results by making it easy to query and visualize disease-associated SNPs and g...Show Details...
Description: DBETH is the Database of Bacterial Exotoxins for Human. The aim of this database is to assemble information on the toxins responsible for causing bacterial pathogenesis in humans.Show Details...
Database maintenance site: European Medicines Agency
Organism(s) covered:
Description: EudraCT (European Union Drug Regulating Authorities Clinical Trials) is the European Clinical Trials Database of all interventional clinical trials of medicinal products commenc...Show Details...
Database maintenance site: ORCID (Open Research and Contributor ID Initiative)
Organism(s) covered:
Description: ORCID is an open, non-profit, community-driven effort to create and maintain a registry of unique researcher identifiers and a transparent method of linking research activities ...Show Details...
Description: GESDB is a platform for sharing simulation data and discussion of simulation techniques for human genetic studies. The database contains simulation scripts, simulated data, and ...Show Details...
Database maintenance site: University of California
Organism(s) covered:All
Description: BiGG is a freely compendium of published genome-scale metabolic networks, combined into a single database. NCBI genome annotations are used to map genes, and metabolites are lin...Show Details...
Database maintenance site: AgBase, Mississippi State University
Organism(s) covered:All
Description: HPIDB 3.0 is a resource that helps annotate, predict and display host-pathogen interactions (HPI). HPI that underpin infectious diseases are critical for developing novel interv...Show Details...
Description: JWS Online is a Systems Biology tool for the construction, modification and simulation of kinetic models and for the storage of curated models.Show Details...
Description: Labome organizes reagent information from high quality suppliers. The reagents include antibodies, siRNA/shRNA, ELISA kits, cDNA clones, proteins/peptides, and biochemicals. To ...Show Details...
Description: GnpIS is a multispecies integrative information system dedicated to plant and fungi pests. It bridges genetic and genomic data, allowing researchers access to both genetic infor...Show Details...
Database maintenance site: HITS (Heidelberg Institute for Theoretical Studies), University of Manchester
Organism(s) covered:All
Description: The FAIRDOMHub is a publicly available resource build using the SEEK software, which enables collaborations within the scientific community. FAIRDOM will establish a support and...Show Details...
Database maintenance site: Auckland Bioengineering Institute
Organism(s) covered:All
Description: The Physiome Model Repository (PMR) is the main online repository for the IUPS Physiome Project, providing version and access controlled repositories, called workspaces, for use...Show Details...
Database maintenance site: Personal Health Informatics - Tampere University
Organism(s) covered:
Description: The dataset was obtained from series of usability tests on a software tool for visualizing continuous health status of a modeled patient. The emphasis of this results are on the...Show Details...
Description: SwissLipids is an expert-curated resource that provides a framework for the integration of lipid and lipidomic data with biological knowledge and models. SwissLipids is updated ...Show Details...
Database maintenance site: Stanford University Center for Biomedical Informatics Research, University of Miami School of Medicine
Organism(s) covered:All
Description: RegenBase is a knowledge base of SCI biology. RegenBase integrates curated literature-sourced facts and experimental details from publications, raw assay data profiling the effe...Show Details...
Database maintenance site: MPIO (Max Planck Institue for Ornithology), University of Konstanz Library
Organism(s) covered:Animalia
Description: A free and public archive of animal tracking datasets associated with peer-reviewed publications. The Repository is the long-term archive associated with Movebank (movebank.org)...Show Details...
Database maintenance site: Baylor College of Medicine, Human Microbiome Project, Broad Institute, JCVI (J. Craig Venter Institute), DACC (NIH Data Analysis and Coordination Center), Washington University in St Louis School of Medicine
Organism(s) covered:Homo sapiens
Description: The NIH Common Fund Human Microbiome Project (HMP) was established in 2008, with the mission of generating resources that would enable the comprehensive characterization of the ...Show Details...
Database maintenance site: USC (University of Southern California)
Organism(s) covered:Danio rerio | Homo sapiens | Mus musculus
Description: FaceBase is a collaborative NIDCR-funded consortium to generate data in support of advancing research into craniofacial development and malformation. It serves as a community re...Show Details...
Database maintenance site: Division of Sleep & Circadian Disorders, Brigham and Women's Hospital/Harvard Medical School
Organism(s) covered:Homo sapiens
Description: The National Sleep Research Resource (NSRR) offers free web access to large collections of de-identified physiological signals and clinical data elements collected in well-chara...Show Details...
Description: The MHAS study is a series of questionnaires distributed in waves, the fourth of which was fielded in the Fall of 2015. Research goals include, but are not limited to the follow...Show Details...
Database maintenance site: INSERM (Institut National de la Sante et de la Recherche Medicale), Pasteur Institute of Morocco
Organism(s) covered:Homo sapiens
Description: A comprehensive database established to offer a web-based access to founder mutation data in Mediterranean population. The database provides an overview about the spectrum of fo...Show Details...
Database maintenance site: Biozentrum, University of Basel, SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:
Description: The Model Archive provides a stable archive for computational macro-molecular models published in the scientific literature. The model archive provides a unique stable accession...Show Details...
Database maintenance site: University of Pennsylvania, IBI (Institute for Biomedical Informatics, University of Pennsylvania)
Organism(s) covered:Homo sapiens
Description: Integrated annotation and sequencing-based expression data for all major classes of human small non-coding RNAs (sncRNAs) for both full sncRNA transcripts and mature sncRNA prod...Show Details...
Database maintenance site: CPGR (Centre for Proteomic and Genomic Research)
Organism(s) covered:Homo sapiens
Description: The LINCS Data Portal provides a unified interface for searching LINCS dataset packages and reagents.LINCS data are being made openly available as a community resource through a...Show Details...
Description: eMERGE is a national network organized and funded by the National Human Genome Research Institute (NHGRI) that combines DNA biorepositories with electronic medical record (EMR) ...Show Details...
Description: Autism spectrum disorders (ASD) are characterized by qualitative impairment in reciprocal social communication, as well as by repetitive, restricted, and stereotyped behaviors. ...Show Details...
Database maintenance site: Gail and Gerald Oppenheimer Center for Neurobiology of Stress at UCLA , University of California
Organism(s) covered:Homo sapiens
Description: The PAIN Repository is a brain imaging archive for structural and functional magnetic resonance scans (MRI, fMRI and DTI) hosted at UCLA and open to all pain investigators.Show Details...
Database maintenance site: Eawag, Johannes Gutenberg University
Organism(s) covered:Bacteria
Description: enviPath is both a database and a prediction system, for the microbial biotransformation of organic environmental contaminants. The database provides the possibility to store an...Show Details...
Database maintenance site: Bioinformatics Centre, Institute of Microbial Technology, Council of Scientific and Industrial Research (CSIR)
Organism(s) covered:Archaea | Bacteria
Description: SigMol is a specialized repository of quorom sensing signaling molecules (QSSMs) in prokaryotes. SigMol harbors information on QSSMs pertaining to different quorum sensing signa...Show Details...
Database maintenance site: ICREA (Cataland Institution for Research and Advanced Studies), BSC (Barcelona Supercomputing Center), Barcelona University, Institute for Research in Biomedicine
Organism(s) covered:All
Description: Atomistic Molecular Dynamics Simulation Trajectories and Analyses of Nucleic Acid Structures.BIGNASim is a complete platform to hold and analyse nucleic acids simulation data, b...Show Details...
Database maintenance site: College of Bioinformatics Science and Technology, Harbin Medical University, GCER (Group of Computational Epigenetic Research), Lab of Developmental Biology, Harbin Institute of Technology
Description: SEA (Super-Enhancer Archive) is a web-based comprehensive resource focusing on the collection, storage and online analysis of super-enhancers. It focuses on integrating super-en...Show Details...
Database maintenance site: CIIT (Comsats Institute of Information Technology), Seoul National University
Organism(s) covered:Archaea | Bacteria
Description: The HGTree database provides putative genome-wide horizontal gene transfer (HGT) information for 2,472 completely sequenced prokaryotic genomes. HGT detection is based on an exp...Show Details...
Description: The GeneWeaver data and analytics website is a publically available resource for storing, curating and analyzing sets of genes from heterogeneous data sources. The system enable...Show Details...
Description: We developed a pipeline to annotate lncRNAs (Long non-coding RNAs) and applied it to 37 plant species and six algae, resulting in the annotation of more than 120 000 lncRNAs. To...Show Details...
Database maintenance site: IITH (Indian Institute of Technology Hyderabad)
Organism(s) covered:
Description: EK3D - an E. coli K antigen 3-dimensional structure database is a repository of 72 E. coli K antigens that provides information about the sugar composition, epimeric & enantiome...Show Details...
Database maintenance site: University of Vienna, Department of Microbiology and Ecosystem Science
Organism(s) covered:All
Description: probeBase is a manually maintained and curated database of rRNA-targeted oligonucleotide probes and primers. Contextual information and multiple options for evaluating in silico...Show Details...
Database maintenance site: Ifremer (Institut francais de recherche pour l'exploitation de la mer)
Organism(s) covered:All
Description: Seanoe (SEA scieNtific Open data Edition) is a publisher of scientific data in the field of marine sciences. It is operated by Sismer within the framework of the Pôle Océan.Data...Show Details...
Database maintenance site: BIOBIX (Lab of bioinformatics and computational genomics)
Organism(s) covered:
Description: sORFs.org is a database for sORFs identified using ribosome profiling. Starting from ribosome profiling, sORFs.org identifies sORFs, incorporates state-of-the-art tools and metr...Show Details...
Database maintenance site: ANDS (Australian National Data Service), eResearch Centre, Monash University
Organism(s) covered:
Description: This database enables the reliable identification of an individual Interferon Regulated Gene (IRG) or IRG signatures from high-throughput data sets (i.e. microarray, proteomic d...Show Details...
Database maintenance site: Karr Lab, Institute for Multiscale Biology & Genomics
Organism(s) covered:
Description: WholeCellSimDB is a database of whole-cell model simulations designed to make it easy for researchers to explore and analyze whole-cell model predictions including predicted:- M...Show Details...
Database maintenance site: BioVeL, Encyclopedia of Life, Natural History Museum, Pensoft Publishers, BHL (The Biodiversity Heritage Library), ViBRANT (Virtual Biodiversity Research and Access Network for Taxonomy), Vizzuality, e-monocot project
Organism(s) covered:All
Description: Scratchpads are an online virtual research environment for biodiversity scientists, allowing anyone to share their data and create their own research networks. Sites are hosted ...Show Details...
Description: DIDA (DIgenic diseases DAtabase) is a novel database that provides for the first time detailed information on genes and associated genetic variants involved in digenic diseases,...Show Details...
