Database maintenance site: Targeted Proteins Research Program
Organism(s) covered:
Description: List of TP Press Release on Research is a portal list of press releases and literature information about studies at the Targeted Proteins Research Program (TPRP) that is a natio...Show Details...
Database maintenance site: Kyoto University Graduate School of Medicine Congenital Anomaly Research Center
Organism(s) covered:Homo sapiens
Description: Kyoto Human Embryo Visualization Project is a database collecting 2D and reconstructed 3D images of human embryos. The embryos including anomalies were mainly derived from thera...Show Details...
Description: ACBD is a database of compounds and small molecules that have been shown to affect Ciona intestinalis. It consists of entries for hundreds of compounds and contains descriptions...Show Details...
Database maintenance site: Keio University Faculty of Science and Technology
Organism(s) covered:Ciona intestinalis
Description: 3DPL is a database of the spatial and temporal localization of proteins in Ciona intestinalis. The database consists of z-stacked images of GFP-fusion proteins in C. intestinali...Show Details...
Database maintenance site: Chiba University Graduate School of Advanced Integration Science Nanoscience
Organism(s) covered:Ciona intestinalis
Description: CiAID is a database of RNA expression profiles of Ciona intestinalis. It contains in situ hybridization profiles for hundreds of genes profiled across many Ciona developmental s...Show Details...
Database maintenance site: Osaka University Institute for Protein Research
Organism(s) covered:
Description: DASH is a database of structural alignments for all known structurally homologous protein domains and chains in the PDB. This database allows to search using PDB ID or single se...Show Details...
Database maintenance site: Osaka University Institute for Protein Research
Organism(s) covered:
Description: Sequence Navigator is a portal site to PDBj that uses BLAST to search for protein structures. The database contains 3D PDB structural representations of proteins and returns res...Show Details...
Closed
GIB-IS: Genome Information Broker for Insertion sequence
Database maintenance site: Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered:Bacteria
Description: GIB-IS is a database of bacterial insertion sequences. It contains annotated IS determined from DDBJ. Users can search by organism, keyword, or IS ID, and data is available for ...Show Details...
Database maintenance site: Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered:Archaea | Bacteria
Description: GTPS is a database of prokaryotic genome sequences performed re-annotation. This database contains chromosomal and plasmid sequences including re-annotated ORFs and RNAs of Bact...Show Details...
Database maintenance site: NITE (National Institute of Technology and Evaluation)
Organism(s) covered:Streptomyces | Bacteria
Description: Successful development of new drugs often relies on information about secondary metabolites produced by actinomycetes.This is a database constructed from literature about recogn...Show Details...
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description: This site contains a database of protein-ligand binding sites that have been compared and numbered according to resemblance in structure.Comparing the huge amounts of small mole...Show Details...
Database maintenance site: Kazusa DNA Research Institute
Organism(s) covered:
Description: Kazusa Molecular Formula Searcher (MFSearcher) is a RESTful Web service that provides researchers with high-throughput elemental composition prediction based on accurate mass va...Show Details...
Description: This is a database of nucleotide sequences of ESTs, cDNAs and oligo DNA microarray probes for Lotus japonicus andArabidopsis thaliana which were obtained from PMPj.Show Details...
Database maintenance site: Tokyo Medical and Dental University
Organism(s) covered:Homo sapiens
Description: This database is called MCG CNV and provides copy number variant (CNV) and loss of heterozygosity (LOH) data. These have been detected by microarray analyses using MCG arrays an...Show Details...
Database maintenance site: Kazusa DNA Research Institute
Organism(s) covered:Lotus japonicus
Description: FuLoJa stands for Lotus japonicus Full-length cDNA Databases and includes full-length cDNA sequences of lotus japonicus that have been analysed with InterPro. Blast search is av...Show Details...
Database maintenance site: RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:Homo sapiens | Mus musculus
Description: SSBC is a database about structures and functions of proteins elucidated at "National Project on Protein Structural and Functional Analyses" (the "Protein 3000" Project, 2002-20...Show Details...
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:Cimex lectularius
Description: ClEST is a database of bedbug (Cimex lectularius) ESTs and clusters archived in Life Science Database Archive. This database includes transcriptomes extracted from unique organs...Show Details...
Database maintenance site: Kyoto University Graduate School of Science
Organism(s) covered:Dugesia japonica
Description: Plabrain DB is a database for analysis of planarian nervous system archived in Life Science Database Archive. Plabrain DB includes FACS-based single-cell PCR data and images of ...Show Details...
Database maintenance site: National Institutes of Biomedical Innovation, Health and Nutrition
Organism(s) covered:
Description: TargetMine is a data warehouse system for assisting drug discovery. It integrates biological data for human, mouse and rat from more than 16 public databases, allowing for the i...Show Details...
Closed
kusarinoko: Search SRA Entries with PubMed Article
Database maintenance site: DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Organism(s) covered:
Description: Kusarinoko is a database of sequencing metadata. The database contains publicly available data for next-generation sequencing Sequence Read Archive (SRA) data. The database is c...Show Details...
Database maintenance site: DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Organism(s) covered:
Description: GGRNA is a database and a Google-like full text search engine for genes and transcripts of 13 species (human, mouse, rat, chicken, etc). GGRNA contains mRNA and noncoding RNA en...Show Details...
Database maintenance site: DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Organism(s) covered:
Description: Gendoo is a database and a search system for diseases, drugs, biological phenomena and anatomy associated with genes and diseases. Gendoo contains MeSH (Medical Subject Headings...Show Details...
Description: RefEx is a reference database of gene expression profiles in normal mammalian tissues. RefEx contains comparative expression data obtained from ESTs, microarray (geneChip), CAGE...Show Details...
Database maintenance site: Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered:All
Description: DRA is a repository for raw output data from next-generation sequencers maintained by DDBJ (DNA Data Bank of Japan) in cooperation with the other members of INSDC. DRA includes ...Show Details...
Database maintenance site: DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Organism(s) covered:
Description: OReFiL is a database and a search system for online life science resources (databases, tools and web-services) mentioned in peer-reviewed papers. OReFiL covers MEDLINE entries a...Show Details...
Database maintenance site: NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:
Description: Life Science Database Cross Search is a data set collection and a cross search system for life science databases developed by the Department of NBDC Program (NBDC) at the Japan ...Show Details...
Database maintenance site: NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:
Description: NBDC Portal is a portal site for databases and web tools in life science, developed by Department of NBDC Program (NBDC) at the Japan Science Technology Agency (JST). The site c...Show Details...
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UCSC GenomeBrowser for Functional RNA
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Database maintenance site: Nara Institute of Science and Technology
Organism(s) covered:Embryophyta | Homo sapiens | Arabidopsis | Bacillus
Description: This database provides information on how species and metabolites relate to each other as does the site above.This page, however, offers the database in an attractive and user-f...Show Details...
Description: This database contains multi-omics data of Escherichia coli, a model organism. Data was gathered under the auspices of the Institute for Advanced Biosciences, Keio University, w...Show Details...
Database maintenance site: The University of Tokyo Research Center for Advanced Science and Technology
Organism(s) covered:Homo sapiens
Description: RefExA is a reference database for gene expression analysis. Search terms include Genbank accession, Unigene cluster ID, gene symbol, and gene name and tissues consist of normal...Show Details...
Database maintenance site: NITE (National Institute of Technology and Evaluation)
Organism(s) covered:
Description: NITE Chemical Risk Information Platform (NITE-CHRIP) is a database provided free of chargeover the Internet, and shows comprehensive information on Risk Assessments and Laws &Re...Show Details...
Database maintenance site: Kazusa DNA Research Institute
Organism(s) covered:Lotus japonicus
Description: This database contains 98838 EST and 3488 full-length cDNA sequences of Lotus. japonicus, a model legume plant. A public dataset (from DDBJ) and a closed dataset can be download...Show Details...
Description: RISH Database is an EST database of trees for sustainable humanosphere. This database has a BLAST search function and contains 6253 EST sequences of Acacia mangium unigene, an e...Show Details...
Database maintenance site: Kazusa DNA Research Institute
Organism(s) covered:
Description: MS-MS Fragment Viewer is a metabolomics database of the LC-FT/ICR-MS measurements of authentic compounds. It contains FT-MS, IT- and FT-MS/MS spectral data with chemical informa...Show Details...
Description: KomicMarket (Kazusa Omics Data Market) is a database that contains annotations of metabolite peaks that have been detected with mass spectrometry (MS) in studies of metabolomics...Show Details...
Closed
H-Exp
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:Homo sapiens
Description: The purpose of DNAProbeLocator is to map DNA array probes onto the human full-length cDNA sequences as found in H-InvDB.Upon receipt of the name or number identifying a probe (p...Show Details...
Description: DIAM is a database of DataBiosafety for Industrial Applications of Microbes. Main categories are: 'law and bylaws for biosafety', the 'basic knowledge of biotechnology', the 'li...Show Details...
Description: DAGViz indicates the nature of this database, which is a Directed Acyclic Graphs Viewer.This site offers access to two databases namely KEGG (Kyoto Encyclopaedia of genes and Ge...Show Details...
Database maintenance site: Kazusa DNA Research Institute
Organism(s) covered:Arabidopsis thaliana | Oryza sativa | Glycine max | Hordeum vulgare | Populus trichocarpa | ...
Description: CoP is an integrated database consisting of multiple databases with information on co-expressed genes and biological processes in plants based on gene Ontology. The omics data i...Show Details...
Closed
ARMLiPDB
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Database maintenance site: University of Alberta/Department of Computing Science
Organism(s) covered:
Description: DrugBank is a database of detailed informatics resources on approved and experimental drugs. The database contains informaiton on drug targets as well as the results of experime...Show Details...
Database maintenance site: SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:
Description: ExPASy is a database of bioinformatics resources. The database contains links to tools and other resources for several bioinformatics purposes including proteomics, genomics, sy...Show Details...
Database maintenance site: Japan Agency for Marine-Earth Science and Technology
Organism(s) covered:
Description: Marine Biological Sample Database is a database of marine biological samples collected during the scientific missions of JAMSTEC vessels (NATSUSHIMA, KAIYO, YOKOSUKA, KAIREI and...Show Details...
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Deep Sea Image Database
Database maintenance site: Japan Agency for Marine-Earth Science and Technology
Organism(s) covered:
Description: JAMSTEC E-library of Deep-sea Images is a database of valuable deep sea research videos and photos which were obtained by JAMSTEC submersibles. It provides videos and photos ass...Show Details...
