MemProtMD
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| Database name: | |
| Alternative name: | - |
| URL: | |
| Database maintenance site: | SBCB Unit, Department of Biochemistry, University of Oxford |
| Country/Region: | United Kingdom |
| Database description: | MemProtMD is a database about intrinsic membrane protein structures derived from Protein Data Bank, which inserted into simulated lipid bilayers using Coarse-Grained Self Assembly Molecular Dynamics simulations. Each entry contains the results of simulations and subsequent analysis providing interactive 3D visualizations of the assembled bilayer and 2D visualizations of lipid contact data and membrane protein topology. It allows users to search by keywords, PDB ID or Uniprot ID, or browsed using classification systems, such as Pfam, Gene Ontology annotation, mpstruc or the Transporter Classification Database. Data are provided to run further molecular simulations of proteins in the database. |
| Organism(s) covered: | |
| Tag - Target: | Protein |
| Tag - Information type: | 3D structure, Image/Movie |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | http://memprotmd.bioch.ox.ac.uk/about/ |
| Link(s) to API / SPARQL endpoint | http://memprotmd.bioch.ox.ac.uk/api/ |
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Link to LSDB Archive:
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- |
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Link to MEDALS Database list:
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- |
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Link to TogoTV:
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- |
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Link to FAIRsharing:
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- |
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Similar databases:
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DASH Protein Model Database PDBsum EM Navigator MIPModDB: A Central Resource for the Superfamily of Major Intrinsic Proteins TP Structure Gallery MDB SARS-Cov2NMR Protein DB HHDB |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2019-11-05 |
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Last update date of this record:
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2019-11-05 |
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Record license:
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Creative Commons CC0 license |