Rice SNP-Seek Database
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| Database name: | |
| Alternative name: | - |
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| Database maintenance site: | IRRI (International Rice Research Institute) |
| Country/Region: | Philippines |
| Database description: | Rice SNP-Seek Database provides Genotype, Phenotype, and Variety Information for rice (Oryza sativa L.). The main functionalities are query for SNPs and Indels from the 3000 Genome Project including 5 reference rice genomes, query for phenotypes and passport data for the 3024 resequenced varieties, and genome browser to display sequence and features for the reference genomes. Bulk download is available. Users can order seeds from the IRRI Genebank Collection. |
| Organism(s) covered: | |
| Tag - Target: | Genome/Gene, Genetic variation, Organism |
| Tag - Information type: | Phenotype, Bioresource, Sequence |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | http://snp-seek.irri.org/_download.zul |
| Link(s) to Metadata of downloadable data: | http://snp-seek.irri.org/_download.zul |
| Link(s) to Terms of use: | https://s3.amazonaws.com/3kricegenome/README-3kRG-SNPs-Permissive-License.txt |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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RiceVarMap v2.0 NBRP C. elegans Mouse Phenome Database OGRO openSNP DisGeNET: a database of gene-disease associations Pheno-Pub J-phenome Infevers |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2018-07-31 |
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Last update date of this record:
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2018-07-30 |
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Record license:
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Creative Commons CC0 license |