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MODOMICS

info ID: NBDC02129
info Database name: MODOMICS
info Alternative name: -
info URL: 
info Database maintenance site: Bujnicki Lab, Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw (IIMCB)
info Country/Region: Poland
info Database description: MODOMICS is the first comprehensive database system for biology of RNA modification. It integrates information about the chemical structure of modified nucleosides, their localization in RNA sequences, pathways of their biosynthesis and enzymes that carry out the respective reactions (together with their protein cofactors). Also included are the protein sequences, the structure data (if available), selected references from scientific literature, and links to other databases allowing to obtain comprehensive information about individual modified residues and proteins involved in their biosynthesis.
info Organism(s) covered: Aquifex aeolicus (), Arabidopsis thaliana (), Archaeoglobus fulgidus (), Bacillus subtilis (), Chlorobium tepidum (), Clostridium thermocellum (), Enterococcus faecium (), Escherichia coli (), Geobacillus kaustophilus (), Geobacter sulfurreducens (), Giardia (), Haemophilus influenzae (), Haloferax volcanii (), Homo sapiens (), Methanocaldococcus jannaschii (), Methanopyrus kandleri (), Micromonospora zionensis (), Mus musculus (), Mycobacterium tuberculosis (), Mycoplasma capricolum (), Nostoc (), Pyrococcus abyssi (), Pyrococcus furiosus (), Pyrococcus horikoshii (), Saccharomyces cerevisiae (), Salmonella typhimurium (), Schizosaccharomyces pombe (), Staphylococcus sciuri (), Streptococcus pneumoniae (), Streptomyces actuosus (), Streptomyces cyaneus (), Streptomyces fradiae (), Streptomyces sp. DSM 40477 (), Streptomyces viridochromogenes (), Sulfolobus acidocaldarius (), Sulfolobus solfataricus (), Thermotoga maritima (), Thermus thermophilus (), Trypanosoma brucei (), Yersinia pestis (), Zymomonas mobilis ()
info Tag - Target: RNA, Protein
info Tag - Information type: Sequence, Chemical structure, Localization, Interaction/Pathway
info Reference(s) - PubMed ID/DOI: 
PubMed ID:
16381833
DOI:
-
PubMed ID:
18854352
DOI:
-
PubMed ID:
23118484
DOI:
-
info Language(s): English
info Operational status: Active
info Link(s) to Downloadable data: -
info Link(s) to Metadata of downloadable data: -
info Link(s) to Terms of use: -
info Link(s) to "How to use": -
info Contact information of database: -
info Link(s) to API / SPARQL endpoint -
info Link to LSDB Archive: -
info Link to MEDALS Database list: -
info Link to TogoTV: -
info Link to FAIRsharing:
info Similar databases: The RNA modification database
RNAct
KEGG GLYCAN
KEGG REACTION
PepBase
PTMcode
KEGG RCLASS
tmRDB
LncRRIsearch
The tmRNA Website
info Record maintainer
info Record source: FAIRsharing Logo(2018-12-21)
info Date of creation of this record: 2019-03-28
info Last update date of this record: 2020-07-09
info Record license: Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license