TreeFam
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| Database name: | |
| Alternative name: | - |
| URL: | |
| Database maintenance site: | EMBL-EBI (European Bioinformatics Institute) |
| Country/Region: | United Kingdom |
| Database description: | TreeFam is a database of phylogenetic trees inferred from animal genomes. It provides the following information about the TreeFam gene family: 1) Summary page Textual background information on the TreeFam gene family 2) Trees Reconciled gene tree 3) Alignment An alignment of all homologous sequences in the TreeFam family 4) Sequences Information about sequences in the TreeFam family, including e-values, Pfam domains, sequence description, and the species name 5) Species Interactive tree graphic displaying species distribution for the full alignment. |
| Organism(s) covered: | , , , |
| Tag - Target: | Genome/Gene, Organism |
| Tag - Information type: | Sequence, Taxonomy, Classification |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | http://www.treefam.org/download |
| Link(s) to Metadata of downloadable data: | http://www.treefam.org/download |
| Link(s) to Terms of use: | http://www.ebi.ac.uk/about/terms-of-use |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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CoevDB HOGENOM TreeBase GreenPhylDB: A phylogenomic database for plant comparative genomics RARTF PhylomeDB Molecular database for the identification of fungi OHNOLOGS GenomeSync Genome Project of Symbiobacterium thermophilum |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2016-06-07 |
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Last update date of this record:
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2020-03-12 |
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Record license:
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Creative Commons CC0 license |