RefEx: Reference Expression dataset
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| Database maintenance site: | DBCLS (Database Center for Life Science, Research Organization of Information and Systems) (Link to J-Global) |
| Country/Region: | Japan |
| Database description: | RefEx is a reference database of gene expression profiles in normal mammalian tissues. RefEx contains comparative expression data obtained from ESTs, microarray (geneChip), CAGE (Cap Analysis gene Expression) tags and RNA-seq for human, mouse and rat. Users can search for tissue-specific genes from a list of 40 organs, as well as gene names and symbols from lists of gene ontology, gene families and chromosomal regions or by keywords. Search results show gene names, heatmaps on 3D human body images visualizing the relative gene expression values, and corresponding reference datasets. |
| Organism(s) covered: | , , |
| Tag - Target: | cDNA/EST, RNA |
| Tag - Information type: | Expression |
| Reference(s) - PubMed ID/DOI: | - |
| Language(s): | Japanese, English |
| Operational status: | Active |
| Link(s) to Downloadable data: | http://refex.dbcls.jp/download.php?lang=en |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | http://refex.dbcls.jp/index.php?lang=en |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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https://dbarchive.biosciencedbc.jp/en/refex/desc.html |
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Link to MEDALS Database list:
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- |
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Link to TogoTV:
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https://togotv.dbcls.jp/en/result.html?type=manual&lang=en&page=1&query=RefEx |
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Link to FAIRsharing:
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- |
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Similar databases:
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AOE FANTOM3 BioGPS The Improved Database Of Chimeric Transcripts and RNA-Seq Data READ AceView Worm Genome CleanEx BodyMap |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2013-06-17 |
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Last update date of this record:
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2022-01-24 |
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Record license:
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Creative Commons CC0 license |