MassBase: A comprehensive mass spectral tags archive for plant metabolomics
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| Database maintenance site: | Kazusa DNA Research Institute (Link to J-Global) |
| Country/Region: | Japan |
| Database description: | MassBase is a fundamental archive of mass spectral tags (MST) for metabolomics. It includes both known and unknown assigned (or predicted) peaks that are found in biological samples (mainly plants) and standard chemical reagents for peak annotation. It provides raw mass chromatograms from various biological samples as well as text-file data of these raw chromatograms. It is expected to contribute to an understanding of the metabolism of organisms together with MassBank and KNApSAcK databases, and that it will help with the development of pipeline software to extract metabolite peaks from annotated metabolites in the process of linking DNA information to metabolism. |
| Organism(s) covered: | , , , , , , , , , , , , , , , , |
| Tag - Target: | Metabolite |
| Tag - Information type: | Method |
| Reference(s) - PubMed ID/DOI: | - |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | http://webs2.kazusa.or.jp/massbase/index.php?action=Massbase_ShowDownload |
| Link(s) to Metadata of downloadable data: | http://webs2.kazusa.or.jp/massbase/index.php?action=Massbase_DownloadAll&filename=README.txt&instrument_id=1&kind=readme |
| Link(s) to Terms of use: | http://webs2.kazusa.or.jp/massbase/index.php?action=Massbase_DownloadAll&filename=README.txt&instrument_id=1&kind=readme |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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https://dbarchive.biosciencedbc.jp/jp/massbase/desc.html |
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Link to MEDALS Database list:
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http://medals.jp/elist/detail/108.html |
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Link to TogoTV:
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- |
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Link to FAIRsharing:
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- |
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Similar databases:
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KomicMarket Metabolomics Workbench MassBank PRIMe - SpinAssign Golm Metabolome Database MetaboLights KNApSAcK Twins ReSpect Metabolonote |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2013-06-17 |
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Last update date of this record:
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2022-01-20 |
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Record license:
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Creative Commons CC0 license |