KaPPA-View 4: Kazusa Plant Pathway Viewer
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| Database maintenance site: | Kazusa DNA Research Institute (Link to J-Global) |
| Country/Region: | Japan |
| Database description: | This web-based tool, KaPPA-View4, represents -omics data on plant metabolic pathway maps that users upload. Differences in gene expressions and metabolite accumulation between samples are visually represented as hue of the gene and metabolite symbols. gene-to-gene and metabolite-to-metabolite relationships, including correlation coefficients of gene co-expressions can be overlayed on the pathway maps. This helps to better understand transcripts and metabolites when examining the roles of genes in the metabolic pathway. The system has been revised, and the processing speed was improved compared to previous versions. Both Windows and Mac OS X are fully supported now and all features of the database are available. Users can use their own metabolic pathway maps for analyses. After uploading DNA microarray or metabolite data, fitting data for each gene or compound is displayed on a metabolic pathway map. |
| Organism(s) covered: | , , , , , , , , , |
| Tag - Target: | cDNA/EST, Protein, Metabolite |
| Tag - Information type: | Expression, Interaction/Pathway |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: PubMed ID: DOI: |
| Language(s): | Japanese, English |
| Operational status: | Active |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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http://medals.jp/elist/detail/103.html |
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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HumanCyc KNApSAcK CobWeb RnR EcoCyc TFGD ATTED-II CREATE portal (Archive) Escherichia coil Multi-omics Database Pathguide Pathway Interaction Database |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2013-06-17 |
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Last update date of this record:
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2013-06-17 |
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Record license:
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Creative Commons CC0 license |