HATODAS: Heavy-atom Database System
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| Database maintenance site: | RIKEN (The Institute of Physical and Chemical Research) (Link to J-Global) |
| Country/Region: | Japan |
| Database description: | This database is named HATODAS, meaning Heavy-ATOm DAtabase System. The purpose is to assist the researcher in preparing heavy-atom derivatives of a certain target protein with greater ease. It contains a list of familiar heavy atom derivatives. Whereas, conventionally, derivatives are prepared through a lengthy process of 'hit-or-miss' procedures, searching this collection of data produces a result of suggested heavy-atom reagents for the target protein, determined by its crystallization conditions and amino-acid sequence. Using this database when studying the structure-determining process of target proteins, revealed that 93 particular sequences (motifs) were more often noticed to be present at the actual heavy-atom binding sites. These sequences are therefore perceived to be preferred for successful heavy-atom binding. The site provides a link to the RIKEN Harima Heavy-atom Database. |
| Organism(s) covered: | - |
| Tag - Target: | Protein, Chemical compound |
| Tag - Information type: | Sequence, 3D structure |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | Japanese |
| Operational status: | Active |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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https://dbarchive.biosciencedbc.jp/jp/hatodas/desc.html |
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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GENIUS II (Archive) Protein-Chemical Structural Interactions DB-SPIRE (Archive) ConfC (Archive) SAHG (Archive) LigandBox eCrystals Sequence Navigator Ligand Expo |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2013-06-17 |
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Last update date of this record:
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2022-01-16 |
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Record license:
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Creative Commons CC0 license |