HarvEST
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| Database name: | |
| Alternative name: | - |
| URL: | |
| Database maintenance site: | University of California |
| Country/Region: | United States |
| Database description: | HarvEST is a database and viewing tools for EST in the following organisms: Barley, Brachypodium, Cassava, Citrus, Coffee, Cowpea, Musa (banana/plantain), Soybean, Rice, Wheat. This database contains all EST sequences which have been quality trimmed, cleaned of vector, and assembled using CAP3 with quality values. It includes an ACE file viewer that allows the user to examine the sequence alignment and readily determine where individual sequences reliably deviate from a consensus sequence, including SNPs. Key features of HarvEST include: a choice of assemblies, sequence alignment viewing, synteny displays (available only in Windows versions), archived BLAST hit information, unigene export, Boolean searching with user-defined quantitative settings, and various other searching, reporting and export functions. The unigene export feature is able to be applied to entire assemblies, individual libraries, or any combination of libraries. |
| Organism(s) covered: | , , , , , , , |
| Tag - Target: | cDNA/EST |
| Tag - Information type: | Sequence, Expression |
| Reference(s) - PubMed ID/DOI: | - |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | http://harvest.ucr.edu/ |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | http://harvest.ucr.edu/ |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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TriFLDB bex-db PRIDE RiceXPro Planarian EST Database Aspergillus oryzae EST DataBase DNA ProbeLocator (Archive) PEDB The database of full-length cDNA and EST sequences of Lotus |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2013-06-17 |
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Last update date of this record:
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2013-06-17 |
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Record license:
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Creative Commons CC0 license |